K562 Elutriation cell cycle phase fractions 2D-MS-CETSA
Ontology highlight
ABSTRACT:
ORGANISM(S): Homo Sapiens (human)
SUBMITTER: Pär Nordlund
PROVIDER: PXD009171 | JPOST Repository | Tue May 08 00:00:00 BST 2018
REPOSITORIES: jPOST
Publications
Modulation of Protein-Interaction States through the Cell Cycle.
Dai Lingyun L Zhao Tianyun T Bisteau Xavier X Sun Wendi W Prabhu Nayana N Lim Yan Ting YT Sobota Radoslaw M RM Kaldis Philipp P Nordlund Pär P
Cell 20180426 6
Global profiling of protein expression through the cell cycle has revealed subsets of periodically expressed proteins. However, expression levels alone only give a partial view of the biochemical processes determining cellular events. Using a proteome-wide implementation of the cellular thermal shift assay (CETSA) to study specific cell-cycle phases, we uncover changes of interaction states for more than 750 proteins during the cell cycle. Notably, many protein complexes are modulated in specifi ...[more]
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The RAW files are:
Carlyle_TMTpool_01_fraction_01 to Carlyle_TMTpool_01_fraction_12
Carlyle_TMTpool_02_fraction_01 to Carlyle_TMTpool_02_fraction_12
Carlyle_TMTpool_03_fraction_01 to Carlyle_TMTpool_03_fraction_12
Carlyle_TMTpool_04_fraction_01 to Carlyle_TMTpool_04_fraction_12
Carlyle_TMTpool_05_fraction_01 to Carlyle_TMTpool_05_fraction_12
Carlyle_TMTpool_06_fraction_01 to Carlyle_TMTpool_06_fraction_12
Carlyle_TMTpool_07_fraction_01 to Carlyle_TMTpool_07_fraction_12
Carlyle_TMTpool_08_fraction_01 to Carlyle_TMTpool_08_fraction_08, Carlyle_TMTpool_08_fraction_09A, Carlyle_TMTpool_08_fraction_09B, Carlyle_TMTpool_08_fraction_10 to Carlyle_TMTpool_08_fraction_12
Carlyle_TMTpool_09_fraction_01 to Carlyle_TMTpool_09_fraction_12
Carlyle_TMTpool_10_fraction_01 to Carlyle_TMTpool_10_fraction_12
Carlyle_TMTpool_11_fraction_01 to Carlyle_TMTpool_11_fraction_12
The labeling scheme is:
TMTpool_01: RUSH_0592 (126), RUSH_0034 (127n), RUSH_0755 (127c), RUSH_0143 (128n), RUSH_1442 (128c), RUSH_0570 (129n), Pooled_sample (129c), Pooled_sample (130n), RUSH_0992 (130c), RUSH_0857 (131n), bridge (131c).
TMTpool_02: RUSH_0974 (126), RUSH_1440 (127n), RUSH_0240 (127c), RUSH_0032 (128n), RUSH_0406 (128c), RUSH_0065 (129n), RUSH_1376 (129c), RUSH_0684 (130n), RUSH_0269 (130c), RUSH_1159 (131n), bridge (131c).
TMTpool_03: RUSH_0136 (126), Pooled_sample (127n), RUSH_0537 (127c), RUSH_1250 (128n), RUSH_0795 (128c), RUSH_0001 (129n), RUSH_0404 (129c), RUSH_0606 (130n), RUSH_0229 (130c), RUSH_0465 (131n), bridge (131c).
TMTpool_04: RUSH_0734 (126), RUSH_0873 (127n), RUSH_0743 (127c), Pooled_sample (128n), RUSH_0712 (128c), RUSH_0751 (129n), RUSH_0302 (129c), RUSH_0499 (130n), RUSH_1218 (130c), RUSH_1421 (131n), bridge (131c).
TMTpool_05: RUSH_1392 (126), RUSH_0890 (127n), RUSH_1006 (127c), RUSH_1063 (128n), RUSH_0128 (128c), RUSH_0590 (129n), RUSH_0674 (129c), RUSH_0572 (130n), RUSH_0413 (130c), RUSH_1288 (131n), bridge (131c).
TMTpool_06: RUSH_1487 (126), RUSH_1348 (127n), RUSH_0007 (127c), RUSH_1323 (128n), RUSH_1498 (128c), RUSH_0976 (129n), RUSH_0859 (129c), RUSH_0544 (130n), RUSH_0067 (130c), RUSH_1384 (131n), bridge (131c).
TMTpool_07: RUSH_0212 (126), RUSH_1474 (127n), Pooled_sample (127c), RUSH_0010 (128n), RUSH_0931 (128c), RUSH_1205 (129n), RUSH_1200 (129c), RUSH_0206 (130n), RUSH_0376 (130c), RUSH_0460 (131n), bridge (131c).
TMTpool_08: RUSH_0927 (126), RUSH_0963 (127n), RUSH_0055 (127c), RUSH_0085 (128n), RUSH_0780 (128c), RUSH_0327 (129n), RUSH_0354 (129c), RUSH_0123 (130n), RUSH_1358 (130c), RUSH_1424 (131n), bridge (131c).
TMTpool_09: RUSH_1334 (126), RUSH_0921 (127n), Pooled_sample (127c), RUSH_1093 (128n), RUSH_1499 (128c), RUSH_1419 (129n), Pooled_sample (129c), RUSH_0555 (130n), RUSH_0618 (130c), RUSH_0732 (131n), bridge (131c).
TMTpool_10: RUSH_1176 (126), Pooled_sample (127n), RUSH_0958 (127c), RUSH_0447 (128n), RUSH_1485 (128c), RUSH_0158 (129n), RUSH_0252 (129c), RUSH_0078 (130n), RUSH_0415 (130c), Pooled_sample (131n), bridge (131c).
TMTpool_11: RUSH_1313 (126), RUSH_0989 (127n), RUSH_0295 (127c), RUSH_0177 (128n), RUSH_0064 (128c), RUSH_0919 (129n), RUSH_0847 (129c), RUSH_0266 (130n), RUSH_0933 (130c), Pooled_sample (131n), bridge (131c).
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Sample pool 1: 126, Bridge; 127n, RB wild-type (replicate 1); 127c, RB_DELTA_cdk (replicate 1); 128n, FLAG-RB wild-type (replicate 1); 128c, FLAG-RB_DELTA_cdk (replicate 1); 129n, FLAG-RB_DELTA_cdk + S230 (replicate 1); 129c, FLAG-RB_delta_cdk + S249 (replicate 1); 130n, ,FLAG-RB_delta_cdk + T252 (replicate 1); 131, Bridge.
Sample pool 2: 126, Bridge; 127n, RB wild-type (replicate 2); 127c, RB_delta_cdk (replicate 2); 128n, FLAG-RB wild-type (replicate 2); 128c, FLAG-RB_delta_cdk (replicate 2); 129n, FLAG-RB_delta_cdk + S230 (replicate 2); 129c, FLAG-RB_delta_cdk + S249 (replicate 2), 130n, ,FLAG-RB_delta_cdk + T252 (replicate 2), 131, Bridge.
Sample pool 3: 126, Bridge; 127n, RB wild-type (replicate 3); 127c, RB_delta_cdk (replicate 3); 128n, FLAG-RB wild-type (replicate 3); 128c, FLAG-RB_delta_cdk (replicate 3); 129n, FLAG-RB_delta_cdk + S230 (replicate 3); 129c, FLAG-RB_delta_cdk + S249 (replicate 3); 130n, FLAG-RB_delta_cdk + T252 (replicate 3); 131, Bridge.
Sample pool 4: 126, Bridge; 127n, FLAG-RB_delta_cdk + T356 (replicate 1); 127c, FLAG-RB_delta_cdk + T373 (replicate 1); 128n, FLAG-RB_delta_cdk + S608 (replicate 1); 128c, FLAG-RB_delta_cdk + S612 (replicate 1); 129n, FLAG-RB_delta_cdk + S780 (replicate 1); 129c, FLAG-RB_delta_cdk + S788 (replicate 1); 130n, FLAG-RB_delta_cdk + S795 (replicate 1); 131, Bridge.
Sample pool 5: 126, Bridge; 127n, FLAG-RB_delta_cdk + T356 (replicate 2); 127c, FLAG-RB_delta_cdk + T373 (replicate 2); 128n, FLAG-RB_delta_cdk + S608 (replicate 2); 128c, FLAG-RB_delta_cdk + S612 (replicate 2); 129n, FLAG-RB_delta_cdk + S780 (replicate 2); 129c, FLAG-RB_delta_cdk + S788 (replicate 2); 130n, FLAG-RB_delta_cdk + S795 (replicate 2); 131, Bridge.
Sample pool 6: 126, Bridge; 127n, FLAG-RB_delta_cdk + T356 (replicate 3); 127c, FLAG-RB_delta_cdk + T373 (replicate 3); 128n, FLAG-RB_delta_cdk + S608 (replicate 3); 128c, FLAG-RB_delta_cdk + S612 (replicate 3); 129n, FLAG-RB_delta_cdk + S780 (replicate 3); 129c, FLAG-RB_delta_cdk + S788 (replicate 3); 130n, FLAG-RB_delta_cdk + S795 (replicate 3); 131, Bridge.
Sample pool 7: 126, Bridge; 127n, FLAG-RB_delta_cdk + S807 (replicate 1); 127c, FLAG-RB_delta_cdk + S811 (replicate 1); 128n, FLAG-RB_delta_cdk + T821 (replicate 1); 128c, FLAG-RB_delta_cdk + T826 (replicate 1); 131, Bridge.
Sample pool 8: 126, Bridge; 127n, FLAG-RB_delta_cdk + S807 (replicate 2); 127c, FLAG-RB_delta_cdk + S811 (replicate 2); 128n, FLAG-RB_delta_cdk + T821 (replicate 2); 128c, FLAG-RB_delta_cdk + T826 (replicate 2); 131, Bridge.
Sample pool 9: 126, Bridge; 127n, FLAG-RB_delta_cdk + S807 (replicate 3); 127c, FLAG-RB_delta_cdk + S811 (replicate 3); 128n, FLAG-RB_delta_cdk + T821 (replicate 3); 128c, FLAG-RB_delta_cdk + T826 (replicate 3); 131, Bridge.
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