Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

NC Table S4

ABSTRACT: Raw LC-MS/MS dataset for Table S1. Chlamy CoIP sample. UVR8-SPA1

ORGANISM(S): Chlamydomonas Reinhardtii

SUBMITTER: Jun Minagawa

PROVIDER: PXD014904 | JPOST Repository | Mon Aug 05 00:00:00 BST 2019

REPOSITORIES: jPOST

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	180518_tokutsu_chlamydo_UVR8_14N_3_SPA1.raw	Raw
	180518_tokutsu_chlamydo_UVR8_14N_3_SPA1.xlsx	Xlsx

Items per page:

1 - 2 of 2

Similar Datasets

NC Table S3

Project description:Raw LC-MS/MS dataset for Table S1. Chlamy CoIP sample. UVR8-COP1

| PXD014905 | JPOST Repository

NC Table S1

Project description:Raw LC-MS/MS dataset for Table S1. Chlamy CoIP sample. CrCO-NFYB

| PXD014906 | JPOST Repository

NC Table S2

Project description:Raw LC-MS/MS dataset for Table S1. Chlamy CoIP sample. NFYB-NFYC

| PXD014907 | JPOST Repository

NC Table S5

Project description:Raw LC-MS/MS dataset for Table S5. Chlamy CoIP sample. CrCO-Ubiquitin

| PXD014903 | JPOST Repository

Table salt microbiome

Project description:Table salt microbiome: raw sequence reads

| PRJNA701909 | ENA

Cotton fiber cytosolic proteins by CF-MS

Project description:This includes raw files for cotton fiber proteome and table S1 for Variation in protein oligomerization drives neofunctionalization during evolution

2021-06-17 | PXD021451 | Pride

Transcriptome profiles of three Muscat table grape cultivars at three developmental stage

Project description:Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene content differences among the Muscat-type cultivars remains unclear. Transcript and terpene metabolite profiles were integrated to elucidate the molecular mechanism of this phenomenon. In this research, three genotypes with different aromatic strengths were investigated by RNA sequencing. A total of 27 fruit samples from three biological replicates were sequenced on Illumina HiSeq 2000 at three stages, corresponding to the veraison; berries had intermediate Brix value and were harvest-ripe. After quality assessment and data clearance, a total of 254.18 Gb of data with more than 97% Q20 bases were obtained, approximately 9.41 Gb data were generated per sample. These results will provide a valuable dataset for the discovery of the mechanism of terpene biosynthesis.

2019-04-27 | GSE130386 | GEO

Mass spectrometry analysis of the blood plasma and serum samples from healthy donors

Project description:Previously, we published a dataset of human blood plasma and serum samples of 10 healthy males and 10 healthy females, fractionated on a set of sorbents (cation exchange Toyopearl CM-650M, CM Bio-Gel A, SP Sephadex C-25 and anion exchange QAE Sephadex A-25) and analyzed by LC-MS/MS individually and pooled in equal amounts (Supplementary Table S1, Sheet 1) [33]. We focused on those peptides that could be found in the blood plasma and serum using a standard search against the database of human proteins (UniProt Knowledgebase, taxon human). The combination of search engines MASCOT and X! Tandem, based on Scaffold 4 software with FDR less than 1%, allowed us to identify 15,530 unique peptides that belong to 2,127 protein groups (Table 1, Supplementary Table S1, Sheets 2 and 3). The Venn diagram shows that slightly less than 40% of the peptides are found in all four analyzed samples (Figures 1A and 1B). About 70% of the peptides are found in at least two samples. The accumulation diagram (Figure 1C) shows that the number of new unique peptides does not reach a plateau after repeated analyses of the same plasma sample — even after six runs. The high variability of the plasma and serum peptidome most likely indicates its sophisticated composition. 33. Arapidi, G. et al. Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents. Data Brief 18, 1204–1211 (2018).

2024-06-14 | PXD027552 | Pride

Fermented table olive microbiota

Project description:16S rRNA (V3 region) microbiota from table olive extracted DNA Raw sequence reads

| PRJNA761998 | ENA

Reanalysis of the blood plasma and serum samples from healthy donors

Project description:Previously, we published a dataset of human blood plasma and serum samples of 10 healthy males and 10 healthy females, fractionated on a set of sorbents (cation exchange Toyopearl CM-650M, CM Bio-Gel A, SP Sephadex C-25 and anion exchange QAE Sephadex A-25) and analyzed by LC-MS/MS individually and pooled in equal amounts (Supplementary Table S1, Sheet 1) [33]. The mass spectrometry peptidomics data was deposited to the ProteomeXchange Consortium via the PRIDE partner repository (dataset identifiers PXD008141 and 10.6019/PXD008141). Direct download link: http://www.ebi.ac.uk/pride/archive/projects/PXD008141. We analyzed this dataset again within this work. The detailed information about the dataset of blood plasma/serum samples of 20 healthy donors fractionated on a set of sorbents is available in the original paper [33], including the clinical parameters of the donors, sample collection, plasma/serum fractionation, peptide extraction and LC-MS/MS analysis. 33. Arapidi, G. et al. Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents. Data Brief 18, 1204–1211 (2018).

2024-06-14 | PXD027587 | Pride