Proteomics

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TMT-based quantitative proteomic analysis of EGF-treated human cancer cells

ABSTRACT: We performed a TMT-based quantitative proteomic analysis of EGF-treated human cancer cells in the presence/absence of Torin 1 using advanced RTS platform on Orbitrap Eclipse Tribrid MS system.

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Masaaki Oyama 

PROVIDER: PXD064188 | JPOST Repository | Sun May 17 00:00:00 BST 2026

REPOSITORIES: jPOST

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20240808_kitamura_HeLa_240611_SP_MetDB_TMTpro_FAIMS_05-07.xlsx Xlsx
20240808_kitamura_HeLa_240611_SP_MetDB_TMTpro_FAIMS_05.raw Raw
20240808_kitamura_HeLa_240611_SP_MetDB_TMTpro_FAIMS_07.raw Raw
20241003_hiroki_GB2_240611_SP_MetDB_TMTpro_FAIMS_05-07.xlsx Xlsx
20241003_hiroki_GB2_240611_SP_MetDB_TMTpro_FAIMS_05.raw Raw
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Publications

Real-time search-assisted multiplexed quantitative proteomics reveals system-wide cryptic translation initiation in human cancer cells.

Kozuka-Hata Hiroko H   Hiroki Tomoko T   Kitamura Aya A   Miyamura Naoaki N   Akiyama Tetsu T   Inoue Jun-Ichiro JI   Tsumoto Kouhei K   Oyama Masaaki M  

Genome biology 20260528 1

<h4>Background</h4>It is generally considered that eukaryotic translation initiation prominently occurs from the first AUG codon by ribosomal scanning from the 5-cap end of each mRNA. In order to identify cryptic internal translation initiation sites defined by alternative AUG codons on a proteome-wide scale, we generate a customized amino acid sequence database which contain differential AUG-guided tryptic peptide fragments computationally predicted from well-curated Swiss-Prot human protein re  ...[more]

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