Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

JPST000207-2 Phosphoproteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000207]

ABSTRACT: Quantitative phosphoproteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS with SILAC labeling (SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. [Original project description]

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Yasushi Ishihama

PROVIDER: RPXD034738 | JPOST Repository | Sat Mar 25 00:00:00 GMT 2023

REPOSITORIES: jPOST

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	120105_pLH01.maxq.txt	Txt
	120105_pLH02.maxq.txt	Txt
	120105_pLH03.maxq.txt	Txt
	120105_pLH04.maxq.txt	Txt
	120105_pLH05.maxq.txt	Txt

Items per page:

1 - 5 of 20

Similar Datasets

Phosphoproteomics comparison between SW480 and SW620 cells

Project description:Quantitative phosphoproteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS with SILAC labeling (SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.

| PXD005176 | JPOST Repository

JPST000207-1 Phosphoproteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000207]

2023-03-25 | RPXD034737 | JPOST Repository

Proteomics comparison between SW480 and SW620 cells

Project description:Quantitative proteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using SCX-RP-MS/MS with SILAC labeling(SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides and proteins were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.

| PXD005172 | JPOST Repository

JPST000208-2 Proteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000208]

2023-03-25 | RPXD034299 | JPOST Repository

JPST000208-1 Proteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000208]

2023-03-25 | RPXD034298 | JPOST Repository

Ribosome-bound lncRNAs between SW620 and SW480

Project description:The differential ribosome-bound lncRNAs between SW620 and SW480 were investigated by RNA-seq.

2020-05-26 | GSE139407 | GEO

MicroRNA expression profile between human colorectal cancer SW480 and SW620 cell line

2016-08-01 | GSE72412 | GEO

MicroRNA expression profile between human colorectal cancer SW480 and SW620 cell line

Project description:Two isogenic human colorectal cancer cell lines (primary SW480 cell line and its lymph node metastatic variant SW620 cell line),as an in vitro metastatic model. We have demonstrated that SW620 cell line possesses high metastasis potential and SW480 cell linepossesses low metastatic potential. We want to compare the whole cell microRNAs profiles of two isogenic colorectal cancer cell lines (SW480 and SW620 cell line), to gain an insight into the molecular events of colon cancer metastasis.

2016-08-01 | E-GEOD-72412 | biostudies-arrayexpress

Bulk Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

Project description:Buk transcriptome profiling of SW480 and SW620 tumors dissected from zebrafish xenografts at 2dpi.

2021-01-14 | GSE163746 | GEO

Ribosome-bound lncRNAs between SW620 and SW480

Project description:Ribosome-bound lncRNAs between SW620 and SW480

| PRJNA579558 | ENA