Dataset Information

Global identification of biofilm-specific proteolysis in Candida albicans

ABSTRACT: The global extracellular protease substrate specificity of C. albicans under biofilm and planktonic (suspension) conditions was determined with a synthetic library of 14-mer peptide substrates using an approach termed Multiplex Substrate Profiling by Mass Spectrometry (MSP-MS). Shotgun proteomics analysis on conditioned media from C. albicans grown under biofilm and planktonic conditions was performed to identify the corresponding proteases.

INSTRUMENT(S): LTQ Orbitrap XL

ORGANISM(S): Candida Albicans (ncbitaxon:5476)

SUBMITTER: Clarissa J. Nobile

PROVIDER: MSV000079564 | MassIVE | Wed Mar 09 15:40:00 GMT 2016

REPOSITORIES: MassIVE

ACCESS DATA

Publications

Global Identification of Biofilm-Specific Proteolysis in Candida albicans.

Winter Michael B MB Salcedo Eugenia C EC Lohse Matthew B MB Hartooni Nairi N Gulati Megha M Sanchez Hiram H Takagi Julie J Hube Bernhard B Andes David R DR Johnson Alexander D AD Craik Charles S CS Nobile Clarissa J CJ

mBio 20160913 5

<h4>Unlabelled</h4>Candida albicans is a fungal species that is part of the normal human microbiota and also an opportunistic pathogen capable of causing mucosal and systemic infections. C. albicans cells proliferate in a planktonic (suspension) state, but they also form biofilms, organized and tightly packed communities of cells attached to a solid surface. Biofilms colonize many niches of the human body and persist on implanted medical devices, where they are a major source of new C. albicans ...[more]

PMID: 27624133

Similar Datasets

Project description:Biofilm formation on medically implanted devices by Candida albicans poses a significant clinical challenge. Here we compared biofilm-associated gene expression in two clinical C. albicans isolates, SC5314 and WO-1, to identify shared gene regulatory responses that may be functionally relevant. Among the 50 genes most highly expressed in biofilms relative to planktonic (suspension-grown) cells, we were able to recover insertion mutations in 25 genes. We observed that 20 of the 25 mutants have altered biofilm-related properties, including cell-substrate adherence, cell-cell signaling, and azole susceptibility. We focused on the most highly up-regulated gene in biofilms, RHR2, which specifies the glycerol biosynthetic enzyme glycerol-3-phosphate phosphatase. Glycerol is 5-fold more abundant in biofilm cells than planktonic cells, and an rhr2D/D strain accumulates 2-fold less biofilm glycerol than the wild type. Under in vitro growth conditions, the rhr2D/D mutant has reduced biofilm biomass and reduced adherence to silicone. The rhr2D/D mutant is severely defective in biofilm formation in vivo, in a rat catheter infection model. Expression profiling of the rhr2D/D mutant indicates that it has reduced expression of cell surface adhesin genes ALS1, ALS3, and HWP1, as well as a large fraction of all other biofilm up-regulated genes. Reduced adhesin expression is the cause of the rhr2D/D mutant biofilm defect, because overexpression of ALS1, ALS3, or HWP1 restores biofilm formation ability to the mutant in vitro and in vivo. Our findings indicate that internal glycerol has a regulatory role in biofilm gene expression, and that adhesin genes are among the main functional Rhr2-regulated genes. Gene expression profiles, in duplicate; (1) for biofilm vs. planktonic growth conditions for the two wild-type clinical isolates of Candida albicans (SC5314 and WO1-white/WO1-opaque), and (2) for rhr2M-NM-^T/M-NM-^T mutant and complemented strain, via RNA-deep sequencing using Illumina GA2 and HiSeq2000 platforms, respectively

Dataset Information

Global identification of biofilm-specific proteolysis in Candida albicans

Publications

Global Identification of Biofilm-Specific Proteolysis in Candida albicans.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure