ABSTRACT: Proteome and phosphopoteome mappings of colon samples from a inflammatory bowel disease mouse model. Two TMT-sets for proteome mappings were generated (set1 and set2). The labeling scheme is: sample 410 (set1, 127n), sample 411 (set1, 128c), sample 421 (set1, 129c), sample 422 (set1, 129n), sample 426 (set2, 128c), sample 430 (set2, 128n), sample 431 (set2, 129c), sample 432 (set2, 129n). One TMT-set was run for phosphopeptide mapping. The labeling scheme is: sample 410 (127n), sample 411 (127c), sample 421 (128n), sample 422 (128c), sample 426 (129n), sample 430 (129c), sample 431 (130n), sample 432 (130c).