NextPP for chromosome-based proteomic research using neXtProt and GENCODE databases

ABSTRACT: In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.

INSTRUMENT(S): LTQ Orbitrap, Orbitrap Fusion, LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Jong Shin Yoo  

PROVIDER: MSV000081385 | MassIVE | Tue Jul 25 19:53:00 BST 2017

SECONDARY ACCESSION(S): PXD007166

REPOSITORIES: MassIVE