Proteomics

Dataset Information

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Human Fecal Gut Microbiome proteomics


ABSTRACT: 5 human fecal gut samples, collected and prepared for standard MudPIT data collection from healthy volunteers, searched with the ComPIL database. x3 replicates each

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Human Metagenome (ncbitaxon:646099)

SUBMITTER: Dennis Wolan  

PROVIDER: MSV000081622 | MassIVE | Wed Oct 18 09:09:00 BST 2017

SECONDARY ACCESSION(S): PXD003907

REPOSITORIES: MassIVE

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Publications

A comprehensive and scalable database search system for metaproteomics.

Chatterjee Sandip S   Stupp Gregory S GS   Park Sung Kyu Robin SK   Ducom Jean-Christophe JC   Yates John R JR   Su Andrew I AI   Wolan Dennis W DW  

BMC genomics 20160816 1


<h4>Background</h4>Mass spectrometry-based shotgun proteomics experiments rely on accurate matching of experimental spectra against a database of protein sequences. Existing computational analysis methods are limited in the size of their sequence databases, which severely restricts the proteomic sequencing depth and functional analysis of highly complex samples. The growing amount of public high-throughput sequencing data will only exacerbate this problem. We designed a broadly applicable metapr  ...[more]

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