Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Acinetobacter baumannii 17978 growth temperature proteomics analysis

ABSTRACT: Proteomic analysis of Acinetobacter baumannii grown at two different incubation temperatures

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Acinetobacter Baumannii Atcc 17978 (ncbitaxon:400667)

SUBMITTER: Ayush Kumar

PROVIDER: MSV000081647 | MassIVE | Wed Oct 25 10:21:00 BST 2017

SECONDARY ACCESSION(S): PXD008045

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Similar Datasets

Effect of growth temperature on gene expression of Lentilactobacillus kefiri and Lactobacillus kefiranofaciens co-culture

Project description:We obtained L. kefiri (JCM5818) and L. kefiranofaciens (JCM6985) from the Japan Collection of Microorganisms (JCM). Bacteria were grown together at two different temperatures of 30C and 37C profiled for transcriptomics, metabolomics, and proteomics.

2023-08-15 | GSE229515 | GEO

Role of chaperones and a cytoplasmatic protease in recombinant protein production in E. coli at suboptimal growth temperature

2010-11-24 | GSE25561 | GEO

Transcriptome profiling of Lactococcus garvieae strains in response to growth temperature

Project description:Analysis of the changes in the transcriptome of two different Lactococcus garvieae strains (21881 & 8831) at different temperatures of growth (18/37 ºC)

2013-11-04 | GSE40318 | GEO

Microarray analysis of the hyperthermophilic archaeon Thermococcus kodakarensis grown at lowest growth temperature

Project description:A hyperthermophilic archaeon Thermococcus kodakarensis can grow in a wide range of temperatures from 60°C to 93°C, optimally at 85°C. To screen the genes that being specifically expressed at lowest growth temperature, 60°C, we investigated the transcriptional profilings of T. kodakarensis grown at 60˚C by comparing with those grown at 85°C.

2016-04-01 | GSE71987 | GEO

Transcriptome profiling of Lactococcus garvieae strains in response to growth temperature

Project description:Analysis of the changes in the transcriptome of two different Lactococcus garvieae strains (21881 & 8831) at different temperatures of growth (18/37 M-BM-:C) Reference design experiment comparing samples of 21881 and 8831 strains of Lactoccocus garvieae, with three biological replicates for each condition grown at 18 and 37 degrees Celsius. The results were referenced to a equimolar mixture of both strains grown at 29 degrees Celsius

2013-11-04 | E-GEOD-40318 | biostudies-arrayexpress

Role of chaperones and a cytoplasmatic protease in recombinant protein production in E. coli at suboptimal growth temperature

Project description:Recent studies have revealed that at lower cultivation temperatures (25°C) much higher percentage of correctly folded recombinant proteins can be extracted from inclusion bodies. The goal of our research was to investigate mechanisms determining characteristics of non-classical inclusion bodies production using gene expression profiling. Two strains of recombinant E. coli [BL21 (DE3)] grown at three different temperatures (25°C, 37°C and 42°C) were included in experiment. Gene expression was studied in two recombinant strains (production and control strain), grown at three different temperatures (25, 37 and 42 oC) in three biological replicates. Cells were harvesed at OD=4, except for the cells grown at 25 oC, here they were harvested at OD=4 and OD=10.

2010-11-24 | E-GEOD-25561 | biostudies-arrayexpress

Thermal plasticity of the miRNA transcriptome during Senegalese sole development

Project description:We report the effect of incubation temperature on embryos and larvae of Solea senegalensis subjected to two different incubation temperatures (15 °C or 21 °C). We found that at some stages, a higher incubation temperature was associated with the expression of miRNAs positively related with growth

2014-06-09 | GSE58297 | GEO

Microarray analysis of the hyperthermophilic archaeon Thermococcus kodakarensis grown at lowest growth temperature

Project description:A hyperthermophilic archaeon Thermococcus kodakarensis can grow in a wide range of temperatures from 60Â°C to 93Â°C, optimally at 85Â°C. To screen the genes that being specifically expressed at lowest growth temperature, 60Â°C, we investigated the transcriptional profilings of T. kodakarensis grown at 60ËC by comparing with those grown at 85Â°C. One-condition experiment, KU216 grown at optimal growth temperature, 85Â°C vs. KU216 grown at lowest growth temperature, 60Â°C. Technical replicates: 2 KU216 grown at 60Â°C, independently measured. One replicate per array.

2016-04-01 | E-GEOD-71987 | biostudies-arrayexpress

Transcriptomic responses of caddisfly Dicosmoecus gilvipes to temperature.

Project description:These samples are from RNA collected from specimens held at 4 temperatures (15.5, 20.0, 25.0 and 28.6degC). Specimens were ramped to one of those temperatures over 4 days following a common garden at 11degC for two weeks. RNA was extracted from thorax tissue and used for RNA-seq. Genes with statistically different expression levels among temperatures were identified.

2022-06-20 | GSE206349 | GEO

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

Project description:A multi-omics approach was used to understand how temperature affects the molecular mechanisms of pathogenicity of Lasiodiplodia theobromae at different temperatures. The transcriptome (Illumina TruSeq) of LA-SOL3 strain grown at 25 °C and 37 °C was analysed.

2019-10-01 | GSE131341 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data