Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glutamicibacter arilaitensis with Penicillium #12 imaging

ABSTRACT: Imaging run on co-culture and isolated cultures of Penicillium sp. #12 with Glutamicibacter arilaitensis. Both strains were isolated from cheese rinds and normalized to OD 0.1 before plating on 2.5% Cheese Curd agar and grown for 7 days at room temperature.

INSTRUMENT(S): autoflex

ORGANISM(S): Glutamicibacter Arilaitensis

SUBMITTER: Laura Sanchez

PROVIDER: MSV000082397 | MassIVE | Thu May 24 08:41:00 BST 2018

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Similar Datasets

Glutamicibacter arilaitensis with Penicillium #12 imaging at low pH

Project description:Imaging run on co-culture and isolated cultures of Penicillium sp. #12 with Glutamicibacter arilaitensis. Both strains were isolated from cheese rinds and normalized to OD 0.1 before plating on 2.5% Cheese Curd agar that was normalized to a pH of 5 and grown for 7 days at room temperature.

2018-05-24 | MSV000082398 | MassIVE

Gene expression of the bacterium Glutamicibacter arilaitensis when grown with Penicillium in cheese

Project description:RNA-seq was used in combination with various analytical chemistry approaches to identify the chemical and genetic basis of pigment production of the bacterium Glutamicibacter arilaitensis when growing on cheese. This bacterium commonly found in cheese rinds where it co-occurs with Penicillium species and other molds. Pinkish-red pigments are produced by the bacterium in response to growth with Penicillium. Both chemical analyses and RNA-seq point to coproporphyrin III as the major metabolite leading to pigment formation.

2018-04-01 | GSE112092 | GEO

Gene expression of the bacterium Glutamicibacter arilaitensis when grown with Penicillium in cheese

Project description:Gene expression of the bacterium Glutamicibacter arilaitensis when grown with Penicillium in cheese

| PRJNA439279 | ENA

Penicillium #12 with Ecoli or P. psychrophila and processed with BLANKA

Project description:Penicillium solitum grown on cheese curd agar with either E. coli and Pseudomonas psychrophila and extracted with acn. Data files processed with blank removal algorithm called BLANKA and compared to unprocessed files.

2019-03-14 | MSV000083571 | MassIVE

GNPS - JB182 Cheese culture extracts with post-LC iron infusion

Project description:Glutamicibacter arilaitensis JB182 cheese culture extracts were analyzed with a post-LC iron infusion.

| MSV000084289 | GNPS

fractionated_extractions_JB182_qTOF_Fractions_D_E_F

Project description:Glutamicibacter arilaitensis grown in large scale liquid Cheese Curd media and extracted with Amberlite XAD16, back extracted with MeOH:DCM 50:50, separated on SPE column to afford 7 fractions labeled A through G based on increasing polarity (A = 10% MeOH, F = 100% MeOH and G = 100% EtoAC. Fractions E(60% MeOH), D(80% MeOH), and F(100% MeOH) run on a qTOF and submitted here. suffix 1 refers to treatment of cultures with desferrioxamine and suffix PLAIN means untreated. JB182new_20170614 is a crude extract from a subsequent small scale growup without desferrioxamine.

2019-04-18 | MSV000083701 | MassIVE

cheese_bacterial_fungal_metabolomics_study_2022_tripartite_cultures

Project description:Dataset 1 contains bacterial-fungal monocultures and tripartite co-cultures in which Scopulariopsis sp. JB370 are grown with 1) Hafnia alvei JB232 and 2) Pseudomonas psychrophila JB418 or Escherichia coli K12. Dataset 2 contains bacterial-fungal tripartite co-cultures in which Penicillium solitum #12 are grown with 1) Glutamicibacter arilaitensis JB182 or Brevibacterium linens JB5 and 2) Pseudomonas psychrophila JB418 or Escherichia coli K12. All cultures from each dataset were grown on 10% cheese curd agar (CCA) and extracted using acetonitrile. Extracts were analyzed via LC-MS(/MS) and processed with MZmine2 for analysis with MetaboAnalyst 5.0 and GNPS feature based molecular networking.

2023-03-08 | MSV000091440 | MassIVE

cheese_bacterial_fungal_metabolomics_study_2022

Project description:Bacterial-fungal monocultures and co-cultures in which Penicillium solitum #12 are grown with one of 4 bacterial growth partners (Glutamicibacter arilaitensis JB182, Brevibacterium linens JB5, Pseudomonas psychrophila JB418, Escherichia coli K12) grown on 10% cheese curd agar (CCA) and extracted using acetonitrile. Extracts were analyzed via LC-MS(/MS) and processed with MZmine2 for analysis with MetaboAnalyst 5.0 and GNPS feature based molecular networking. Dataset 3 contains monocultures and pairwise co-cultures in which full plate (100 mm) extractions were performed. Dataset 4 contains monocultures in which plug (30 mm) extractions were performed. Dataset 5 contains monocultures and pairwise co-cultures in that were grown regularly or on nitrocellulose membranes using plate count agar with milk and salt (PCAMS).

2023-02-24 | MSV000091360 | MassIVE

Glutamicibacter arilaitensis strain:LJH19

Project description:Glutamicibacter arilaitensis strain:LJH19 Genome sequencing and assembly

| PRJNA522655 | ENA

GNPS - Penicillium #12 with Ecoli or P. psychrophila and unprocessed data

Project description:Penicillium solitum grown on cheese curd agar with either E. coli and Pseudomonas psychrophila and extracted with acn. Data files unprocessed and compared to processed files with blank removal algorithm called BLANKA.

2020-02-11 | MSV000084946 | GNPS

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data