Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

2 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 1000

Antibiotic Mice All Tissue

ABSTRACT: These are raw and mzXML data from mice tissue obtained from the Raffatellu lab. This excludes the fecal data collected from the time series.

INSTRUMENT(S): maXis

ORGANISM(S): Animalia

SUBMITTER: Pieter Dorrestein Robert Quinn

PROVIDER: MSV000083446 | MassIVE | Thu Feb 14 22:21:00 GMT 2019

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MSV000083446	Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - Antibiotic Mice All Tissue

Project description:These are raw and mzXML data from mice tissue obtained from the Raffatellu lab. This excludes the fecal data collected from the time series.

2019-02-14 | MSV000083446 | GNPS

Antibiotic Mice Liver data

Project description:These are raw and mzXML files from the PD17-PD36 mice obtained from Raffatellu lab. Mice were given antibiotics and gavaged with glycocholic acid, taurocholic acid, phenylalanacholic acid, leucocholic acid and tyrosocholic acid.

2019-02-13 | MSV000083436 | MassIVE

GNPS - Antibiotic Mice Liver data

2019-02-13 | MSV000083436 | GNPS

Mice brain tissue IP experiment

Project description:This is a experment want to fish out the proteins in the mice brain can interact with sodium chanel protein Nav1.7, immuno precipatation and lab free mass spectrmetry were used to identify Nav1.7 Interation parter proteins.

2018-01-15 | PXD004926 | Pride

mRNA sequencing of small intestinal tissue of germfree mice

Project description:With this study we wanted to evaluate the impact of murine norovirus infection of germfree mice and to compare it to germfree mice which have received fecal transplants of conventional mice.

2014-11-13 | GSE60163 | GEO

GNPS - Antibiotic Mice Gavage Fecal Longitudinal Study

Project description:Mice fecal samples collected longitudinally before and after antibiotic treatment. These mice were gavaged with different bile acids and fecal samples were collected from 25 mice. (Corrected massive ID with only files applying to this study)

2019-05-14 | MSV000083777 | GNPS

Non-targeted LC–MS metabolomics of human left atrial appendage tissue with high vs low myocardial micro(nano)plastic burden

Project description:<p>Non-targeted metabolomics profiling was performed on human left atrial appendage tissue obtained from cardiac surgery patients. Samples were grouped by myocardial nanoplastic (NP) burden (High vs Low). Polar metabolites were analyzed by UHPLC–Orbitrap MS in both positive and negative ionization modes. Derived spectral data are provided as mzXML files for each sample and polarity.</p>

2026-03-28 | MTBLS14056 | MetaboLights

16S rRNA sequencing analysis of bacteiral community composition in antibiotic-treated mouse fecal sample

Project description:Purpose: This study aims to compare and analyze the differences in bacterial community composition in fecal samples from mice treated with Control(DW), Vancomycin (VAN), Ampicillin (AMP), Neomycin (NEO), Metronidazole (MET), and a combination of all antibiotics (ALL, VANM) using 16S rRNA sequencing. Methods: Each antibiotics treated mice's fecal samples were collected and stored -80'c until analyzation. DNA was extracted using the NucleoSpin DNA Stool Kit (MACHEREY-NAGEL) following the manufacturer’s protocol. Metagenomic sequencing was performed on an Illumina MiSeq platform (Illumina), targeting the V3 and V4 regions of the 16S rRNA gene according to the manufacturer's instructions. PCR products were purified using AMPure XP beads, and sequencing adapters were added using the Nextera XT Index Kit (Illumina). The library was further purified with AMPure XP beads and quantified using automated electrophoresis with the TapeStation System (Agilent). Sequencing was performed using the MiSeq v3 reagent kit (Illumina), following the manufacturer’s protocol. Results: QIIME2 (v2023.02) was used to process and analyze 16S rRNA gene amplicon sequencing data, from sequence preprocessing to taxonomic classification. Paired-end sequences were merged and quality-filtered using Deblur. The resulting amplicon sequence variants (ASVs) were used for downstream analyses. Conclusions: Our study presents a comparative analysis of bacterial community composition in fecal samples from antibiotic-treated mice. We observed that microbiota composition varied distinctly depending on the type of antibiotic administered.

2026-01-28 | GSE291841 | GEO

20231006 mice urine and tissue samples with 6PPD and 6PPDQ exposure

Project description:Time series of urine samples collected from male and female mice after exposure to 6PPD and 6PPDQ. Analyzed with LC-DDA-MS/MS. Rerun of tissue samples from pregnant mice exposed to 6PPD and 6PPDQ.

2023-10-06 | MSV000093059 | MassIVE