Global coordination of metabolic pathways in Escherichia coli by active and passive regulation

ABSTRACT: In this study, we identify the regulatory mechanisms that coordinate catabolism and anabolism in the bacterium Escherichia coli. Integrating protein, metabolite, and metabolic flux changes in genetically implemented gradual catabolic or anabolic limitations, we show that a combination of global and local mechanisms coordinates the response to metabolic limitations. To allocate proteomic resources between catabolism and anabolism, E. coli uses a simple global gene regulatory program. Surprisingly, this program is largely implemented by a single transcription factor Crp, which not only directly activates the expression of catabolic enzymes, but also indirectly reduces the expression of anabolic enzymes by passively sequestering cellular resources needed for their synthesis. However, this regulatory program rarely controls metabolic fluxes alone; instead, fluxes are further adjusted locally through passive changes in metabolite concentrations. Together, these mechanisms constitute a limited but effective global regulatory program that coarsely partitions resources between different parts of metabolism while ensuring the robust coordination of individual metabolic reactions.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Escherichia Coli K-12 (ncbitaxon:83333)

SUBMITTER: Uwe Sauer   James R. Williamson   Karl Kochanowski   Terence Hwa  

PROVIDER: MSV000086992 | MassIVE | Wed Mar 03 11:39:00 GMT 2021

SECONDARY ACCESSION(S): PXD024504

REPOSITORIES: MassIVE