Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plant SynCom single and co-culture extracts repetition

ABSTRACT: Non-targeted metabolomics of synthetic community created from the Arabidopsis phyllosphere microbiota.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Environmental Samples <bacillariophyta> (ncbitaxon:33858)

SUBMITTER: Danie Petras

PROVIDER: MSV000093353 | MassIVE | Fri Nov 10 07:17:00 GMT 2023

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Similar Datasets

GNPS - Plant SynCom single and co-culture extracts repetition

Project description:Non-targeted metabolomics of synthetic community created from the Arabidopsis phyllosphere microbiota.

2023-11-10 | MSV000093353 | GNPS

Plant SynCom single strain extract

Project description:Single strain cultures of plant Synthetic microbial community

2022-11-22 | MSV000090766 | MassIVE

Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis

Project description:RNASeq of roots from two genotypes of Arabidopsis thaliana plants, Col-0 and myb36-2 grown axenically or with a 41 member bacterial Synthetic Community (SynCom) to explore the interaction between the root diffusion barriers and the root microbiome.

2020-11-01 | GSE151376 | GEO

The role of the TGF-β/DBL-1 pathway in shaping the C. elegans gut microbiota

Project description:Comparison of gene expression profiles of Caenorhabditis elegans fed a complex microbiota (either a synthetic community or in soil) or a standard Escherichia coli diet. We find that immune and digestion genes are up-regulated in C. elegans that were fed a complex microbiota.

2018-01-01 | GSE97934 | GEO

Synthetic Plant Community - single and co-cultured

Project description:Non-targeted metabolomics of microbial community from plant leaves.

2023-08-21 | MSV000092705 | MassIVE

RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]

Project description:This study evaluates whether different pre-treatments (+Pi, -Pi and +Phi) influences the phosphate starvation transcriptional response triggered by a bacterial synthetic community in Arabidopsis seedlings.

2017-03-20 | GSE87337 | GEO

plant metagenome

Project description:Synthetic bacterial community of duckweed

| PRJDB10361 | ENA

Next-generation sequence analysis of the submerged Iris tectorum in plant culture and in plant-algae co-culture

Project description:We conducted a culture experiment by deeply submerging plants in swine wastewater in culturing Iris tectorum and co-culturing Iris tectorum and Dictyosphaerium sp., and found that the plants grew sub-normal in the plant-microalgae co-culture while the plants were dead after 21 days in the plant culture. We generated a comprehensive RNA-seq dataset from the submerged Iris tectorum leaves in both the plant culture and the plant-microalgae co-culture, aiming at providing information on the response mechanisms of the plants to waterlogging stress. Besides raw reads of the RNA-seq dataset, we used DEseq2 algorithms to detect the differently expressed genes in the plants between the different cultures. Additionally, we performed the plant disease resistance gene analysis for all the differentially expressed genes.

2018-11-03 | GSE122095 | GEO

Non-pathogenic leaf-colonising bacteria elicit plant immune responses in a colonisation density-dependent manner

Project description:Leaves are colonised by a complex mix of microbes, termed the leaf microbiota. Even though the leaf microbiota is increasingly recognised as an integral part of plant life and health, our understanding of its interactions with the plant host is still limited. Here, mature, axenically grown Arabidopsis thaliana plants were spray-inoculated with different densities of the non-pathogenic bacterium Williamsia sp. Leaf354. High bacterial titers caused disease phenotypes and led to severe transcriptional reprogramming with a strong focus on plant defence.

2023-05-19 | GSE232248 | GEO