Ahmed_LINC00324_timsTOFPro2_P124_VS18_VS19

ABSTRACT: This dataset consists of 12 raw MS files and associated peak lists and results files, acquired on a timsTOF Pro 2 mass spectrometer. Six files were acquired in Data Dependent Acquisition mode and six were acquired in Data Independent Acquisition mode. Samples were generated by Sameen Ahmed. Sample clean-up, digestion, and mass spectrometry acquisition were performed by Cassandra Wong. Analysis was performed by Sameen Ahmed, Philipp Maass, and Cassandra Wong. The files are associated with a manuscript submitted for publication by Sameen Ahmed et al. The main goal of this paper was to determine total protein levels in wildtype (WT) and deltaLINC00324 C-28/I2 chondrocytes. Specifically, investigated how the loss of the tRNA-overlapping lncRNA locus LINC00324 locus affected codon usage at the protein level. Philipp G. Maass is the corresponding author of the manuscript ([e-mail]); Anne-Claude Gingras should be contacted for questions on this dataset ([e-mail]) This submission is associated with 4 Supplementary Files (in addition to this README file) Table 1 describes the composition of the DDA dataset Table 2 lists all the DDA peptide identification evidence (MSFragger) Table 3 describes the composition of the DIA dataset Table 4 lists the DIA protein identifications (DIA-NN) Table 5 lists the DIA peptide identifications (DIA-NN)

INSTRUMENT(S): timsTOF Pro 2

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Anne-Claude Gingras  

PROVIDER: MSV000095375 | MassIVE | Thu Jul 18 12:38:00 BST 2024

SECONDARY ACCESSION(S): PXD054048

REPOSITORIES: MassIVE