Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Discovery of novel binding molecules for plant-associated Proteobacterial LuxR solos (QS-derived)

ABSTRACT: Discovery of novel LuxR solo regulators and their cognate binding signal molecules from non-canonical biosynthetic gene clusters (BGCs). Untargeted LC-MS/MS acquisition was performed in Positive mode on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA).

INSTRUMENT(S): Orbitrap Exploris 240

ORGANISM(S): Pseudomonas Cichorii (ncbitaxon:36746) Pseudomonas Japonica (ncbitaxon:256466) Paraburkholderia Phenazinium (ncbitaxon:60549) Pseudomonas Brassicacearum (ncbitaxon:930166) Pseudomonas Fluorescens (ncbitaxon:294)

SUBMITTER: Pieter C. Dorrestein

PROVIDER: MSV000098307 | MassIVE | Tue Jun 24 13:33:00 BST 2025

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Identification of pigmented compounds linked to LuxR solos in plant-associated bacteria

Project description:Discovery of novel LuxR solo regulators and their cognate binding signal molecules from non-canonical biosynthetic gene clusters (BGCs). Fractionation of the extracts via Combiflash and untargeted LC-MS/MS acquisition was performed in Positive mode on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA)

| MSV000099356 | MassIVE

GNPS - SDZWA Elephant and Rhino Milk Untargeted LC-MSMS NEG

Project description:Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size PolarC18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA).

2024-12-05 | MSV000096600 | GNPS

GNPS - SDZWA Elephant and Rhino Milk Untargeted LC-MSMS POS

2024-12-05 | MSV000096599 | GNPS

GNPS - SDZWA Elephant and Rhino Fecal Untargeted LC-MSMS POS

| MSV000099145 | GNPS

GNPS - Methanolic extracts containing Bile acids BAX 1889 - 2000

Project description:Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA)

| MSV000099130 | GNPS

GNPS - Pierce ASD Stool Metabolomics Dataset

Project description:ASD Fecal metabolomics dataset for Karen Pierce. Untargeted LC-MS/MS acquisition was performed on a Vanquish UHPLC system coupled to Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA).

2024-12-18 | MSV000096694 | GNPS

GNPS - AGB Stomach Lystates Metabolomics Dataset

Project description:Metabolomics dataset of human stomach lysate samples. Untargeted LC-MS/MS acquisition was performed on a Vanquish UHPLC system coupled to a Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA).

2024-12-18 | MSV000096695 | GNPS

GNPS - Metabolomics of Arbacia lixula development

Project description:Metabolomic experiment for sea urchin development. Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA).

| MSV000097754 | GNPS

GNPS - Reef-building coral holobionts from Ranobe Bay Madagascar - POS

Project description:Reef-building coral holobionts from Ranobe Bay, Madagascar. Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA)

| MSV000098069 | GNPS

GNPS - Reef-building coral holobionts from Ranobe Bay Madagascar - NEG

Project description:Reef-building coral holobionts from Ranobe Bay, Madagascar. Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Negative mode. Chromatographic separation was performed on a Kinetex 2.6 um 100 A pore size Polar C18 reversed phase UHPLC column 100 x 2.1 mm (Phenomenex, Torrance, CA)

| MSV000098070 | GNPS

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data