Metabolomics

Dataset Information

Photorespiration is linked to DNA methylation by formate as one-carbon source.


ABSTRACT: DNA methylation is a key epigenetic modification regulating genome organization, stability, and gene expression. Stable DNA methylation critically relies on methyl groups provided through folate-mediated one-carbon (C1) metabolism, yet the origin and regulation of C1 supply remain elusive. Here we demonstrate that photorespiration serves as a major C1 source for DNA methylation in Arabidopsis. We show that C1 from formate, a photorespiratory byproduct, is incorporated into 5-methyl-cytosine via the reductive cytosolic folate pathway. This occurs predominantly during the day, negatively regulating serine utilization as alternative C1 source. Consequently, suppression of photorespiration under elevated CO₂ levels alters the DNA methylation landscape, an effect exacerbated when regulation of C1 metabolism by the formate-dependent pathway is impaired. Thus, our findings link the fundamental metabolic process of photorespiration to epigenetic stability, highlighting how rising atmospheric CO₂ levels can induce DNA methylation changes.

INSTRUMENT(S): Gas Chromatography MS -

PROVIDER: MTBLS13444 | MetaboLights | 2026-01-06

REPOSITORIES: MetaboLights

Dataset's files

Source:
Action DRS
220624_nb_C12for_SD_m_1_b.CDF Other
220624_nb_C12for_SD_m_2_b.CDF Other
220624_nb_C12for_SD_m_3_b.CDF Other
220624_nb_C12for_SD_mt_1_b.CDF Other
220624_nb_C12for_SD_mt_2_b.CDF Other
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