Metabolomics

Dataset Information

0

A metabolomic strategy defines the regulation of lipid content and global metabolism by Δ9 desaturases in Caenorhabditis elegans


ABSTRACT: Caenorhabditis elegans provides a genetically tractable model organism to investigate the network of genes involved in fat metabolism and how regulation is perturbed to produce the complex phenotype of obesity. C. elegans possess the full range of desaturases, including the delta-9 desaturases expressed by fat-5, fat-6 and fat-7. They regulate the biosynthesis of monounsaturated fatty acids, used for the synthesis of lipids including phospholipids, triglycerides and cholesteryl esters. Gas chromatography mass spectrometry (GC-MS) was used to define the metabolome of all the possible knock-outs for the delta 9 desaturases, including for the first time intact lipids. Despite the genes having similar enzymatic roles, excellent discrimination was achievable for all single and viable double mutants highlighting the distinctive roles of fat-6 and fat-7, both expressing steroyl-CoA desaturases. The metabolomic changes extend to aqueous metabolites demonstrating the influence delta 9 desaturases have on regulating global metabolism and highlighting how comprehensive metabolomics is more discriminatory than classically used dyes for fat staining. The propagation of metabolic changes across the network of metabolism demonstrates that modification of the delta 9 desaturases places C.elegans into a catabolic state compared with wildtype controls.

INSTRUMENT(S): Gas Chromatography MS - - - DSQ II Single Quadrupole GC/MS (Thermo Scientific)

PROVIDER: MTBLS3 | MetaboLights | 2012-02-14

REPOSITORIES: MetaboLights

Dataset's files

Source:
Action DRS
Cecilia_AA_batch23_05.raw Raw
Cecilia_AA_batch23_06.raw Raw
Cecilia_AA_batch23_07.raw Raw
Cecilia_AA_batch23_08.raw Raw
Cecilia_AA_batch23_10.raw Raw
Items per page:
1 - 5 of 67
altmetric image

Publications

A metabolomic strategy defines the regulation of lipid content and global metabolism by Δ9 desaturases in Caenorhabditis elegans.

Castro Cecilia C   Sar Funda F   Shaw W Robert WR   Mishima Masanori M   Miska Eric A EA   Griffin Julian L JL  

BMC genomics 20120120


<h4>Background</h4>Caenorhabditis elegans provides a genetically tractable model organism to investigate the network of genes involved in fat metabolism and how regulation is perturbed to produce the complex phenotype of obesity. C. elegans possess the full range of desaturases, including the Δ9 desaturases expressed by fat-5, fat-6 and fat-7. They regulate the biosynthesis of monounsaturated fatty acids, used for the synthesis of lipids including phospholipids, triglycerides and cholesteryl est  ...[more]

Similar Datasets

2014-01-01 | E-GEOD-46077 | biostudies-arrayexpress
2019-07-13 | E-MTAB-7272 | biostudies-arrayexpress
2014-01-01 | GSE46077 | GEO
2025-03-12 | GSE291387 | GEO
2026-02-05 | GSE318477 | GEO
2017-08-19 | GSE102802 | GEO
2018-03-13 | GSE111728 | GEO
2011-07-13 | E-GEOD-26207 | biostudies-arrayexpress
2011-07-14 | GSE26207 | GEO
2023-10-02 | GSE243984 | GEO