Metabolomics

Dataset Information

0

Serine and 1-carbon metabolism are required for HIF-mediated protection against retinopathy of prematurity


ABSTRACT: We determined which metabolic pathways are activated by hypoxia-inducible factor 1-mediated (HIF-1-mediated) protection against oxygen-induced retinopathy (OIR) in newborn mice, the experimental correlate to retinopathy of prematurity, a leading cause of infant blindness. HIF-1 coordinates the change from oxidative to glycolytic metabolism and mediates flux through serine and 1-carbon metabolism (1CM) in hypoxic and cancer cells. We used untargeted metabolite profiling in vivo to demonstrate that hypoxia mimesis activates serine/1CM. Both [13C6] glucose labeling of metabolites in ex vivo retinal explants as well as in vivo [13C3] serine labeling of metabolites followed in liver lysates strongly suggest that retinal serine is primarily derived from hepatic glycolytic carbon and not from retinal glycolytic carbon in newborn pups. In HIF-1α2lox/2lox albumin-Cre-knockout mice, reduced or near-0 levels of serine/glycine further demonstrate the hepatic origin of retinal serine. Furthermore, inhibition of 1CM by methotrexate blocked HIF-mediated protection against OIR. This demonstrated that 1CM participates in protection induced by HIF-1 stabilization. The urea cycle also dominated pathway enrichment analyses of plasma samples. The dependence of retinal serine on hepatic HIF-1 and the upregulation of the urea cycle emphasize the importance of the liver to remote protection of the retina.

INSTRUMENT(S): Liquid chromatography MS/MS - Negative, Liquid chromatography MS/MS -Positive, Liquid chromatography MS/MS positive

PROVIDER: MTBLS856 | MetaboLights | 2019-07-05

REPOSITORIES: MetaboLights

Dataset's files

Source:
Action DRS
Neg_FG1includMS2.mzML Mzml
Neg_FG2includMS2.mzML Mzml
Neg_FG3includMS2.mzML Mzml
Neg_FG4includMS2.mzML Mzml
Neg_FG5includMS2.mzML Mzml
Items per page:
1 - 5 of 50
altmetric image

Publications

Serine and 1-carbon metabolism are required for HIF-mediated protection against retinopathy of prematurity.

Singh Charandeep C   Hoppe George G   Tran Vincent V   McCollum Leah L   Bolok Youstina Y   Song Weilin W   Sharma Amit A   Brunengraber Henri H   Sears Jonathan E JE  

JCI insight 20190725 14


We determined which metabolic pathways are activated by hypoxia-inducible factor 1-mediated (HIF-1-mediated) protection against oxygen-induced retinopathy (OIR) in newborn mice, the experimental correlate to retinopathy of prematurity, a leading cause of infant blindness. HIF-1 coordinates the change from oxidative to glycolytic metabolism and mediates flux through serine and 1-carbon metabolism (1CM) in hypoxic and cancer cells. We used untargeted metabolite profiling in vivo to demonstrate tha  ...[more]

Similar Datasets

2020-06-30 | MSV000085654 | GNPS
2016-05-03 | GSE74170 | GEO
2020-03-12 | MTBLS1228 | MetaboLights
2023-04-18 | GSE229730 | GEO
2025-05-07 | PXD056490 | Pride
2025-06-06 | GSE269846 | GEO
2014-04-20 | GSE45403 | GEO
2014-02-27 | E-GEOD-55389 | biostudies-arrayexpress
2014-04-20 | E-GEOD-45403 | biostudies-arrayexpress
2022-10-09 | GSE138719 | GEO