Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

OEX_Jian_2211281141

ABSTRACT: A widely untargeted metabolic analysis was performed on ZX4 and ZX12 seeds col-lected at 20, 30, and 40 DAF, with three biological replicates.

TISSUE(S): ['seeds']

SUBMITTER: Jian Wang

PROVIDER: OEX00021116 | NODE | 2022-11-28

REPOSITORIES: NODE

ACCESS DATA

Json Xml

Similar Datasets

The RNA-seq data of root tissue from transgenic poplar

Project description:The root tissues of WT, bHLH58-OE#20, bhlh58-KO#6, bHLH151-OE#17, bhlh151-KO#40, and bhlh58/151-KO#32 plants were collected for RNA-seq analysis with three biological replicates.

2026-03-23 | GSE295422 | GEO

Dynamic study of the cell wall integrity signaling pathway in Aspergillus nidulans

Project description:This study aims to determine the downstream impact of cell wall perturbation on the filamentous fungus, Aspergillus nidulans.Fungi were treated with micafungin during mid-exponential growth phase and RNA-sequencing was performed at 0, 5, 10, 15, 20, 25, 30, 40, 50, 60, 75, 90, and 120 minutes of exposure in 3 biological replicates.

2020-05-01 | GSE136562 | GEO

Mouse retina proteomics - Integrative subcellular proteomic analysis allows accurate prediction of human disease causing genes

Project description:Proteomic experiments were performed on the outer segment (OS) and the remaining retina (RR). For the OS proteomics, three biological replicates were performed for mouse at the age of P15, which included 24, 26 and 26 retinas respectively. We also performed the OS proteomic experiment on 40 retinas from mice at age P13. For the RR proteomic experiments, two biological replicates were performed independently using 30 and 30 retinas respectively.

2016-02-26 | PXD003441 | Pride

RNA G-quadruplex promote codon repeat-associated ribosomal frameshifting in human gene

Project description:Ribosome profiling was conducted in HCT116 cells. Three biological replicates were performed.

| PRJEB101115 | ENA

Impact of Nonsense-mediated mRNA Decay on the Global Expression Profile of Budding Yeast

Project description:Isogenic UPF1+ or upf1- yeast strains were treated with 10 ug/ml thiolutin to inhibit global transcription. Targets were obtained from 16 time points: 0, 2, 4, 6, 8, 10, 12, 15, 20, 25, 30, 35, 40, 45, 50, 60 minutes after transcription inhibition. Three biological replicates of each were generated and the expression profiles were determined using Affymetrix YG-S98 arrays. Comparisons between the sample groups allow the identification of genes with differential expression over time between UPF1+ and upf1-. Keywords: time course

2006-08-31 | GSE3076 | GEO

Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton

Project description:Four biological replicates of Arabidopsis seedlings supplemented with 1 µM Br-3’,5’-cAMP, or water (control) were subjected to untargeted proteomics analysis at two time-points: 30 min and 1 h. Rather than wild-type, we used act2act7 mutant because of the evident phenotypic changes associated with the 3’,5’-cAMP supplementation.

2023-05-22 | PXD030124 | Pride

Transcriptome analysis of 6 hours post fertilization mecp2-null versus wild type zebrafish embryos

Project description:RNA sequencing was performed on RNA isolated from groups of 6 hpf wild type and mecp2-null embryos (n=3 biological replicates per condition with 30 embryos pooled per replicate). DESeq2 analysis was performed using https://usegalaxy.org/

2016-09-01 | GSE80348 | GEO

mRNA-seq data during learning and memory in mice

Project description:RNA was extracted from homogenates (HOM) and synapses (SYN) of mice on days 1, 6, and 20 after Morris water maze (MWM) training. Regular RNA sequencing was performed using the NovaSeq 6000 system (Illumina). Our protocol yielded reliable input for SYN using hippocampal RNA from ten mice. In contrast, we generated input libraries for HOM using hippocampal RNA from three mice per three biological replicates

2024-03-31 | GSE262566 | GEO

Selenite treatment of a Saccharomyces cerevisiae wild type strain.

Project description:In the frame of a multispecies project, Saccharomyces cerevisiae cells were treated with 10 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replicates were performed.

2018-11-12 | E-MTAB-7022 | biostudies-arrayexpress

Selenite treatment of a Lachancea thermotolerans wild type strain

Project description:In the frame of a multispecies project, Lachancea thermotolerans cells were treated with 5 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replicates were performed.

2018-11-12 | E-MTAB-7045 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data