Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Sphaerisporangium siamense

Project description:Sphaerisporangium siamense overview

| PRJNA640704 | ENA

Colletotrichum siamense

Project description:Colletotrichum siamense overview

| PRJNA573267 | ENA

Colletotrichum siamense strain:HBCG01

Project description:Colletotrichum siamense strain:HBCG01 Genome sequencing and assembly

| PRJNA597788 | ENA

Colletotrichum siamense strain:HBCG01

Project description:Colletotrichum siamense strain:HBCG01 Genome sequencing and assembly

| PRJNA597657 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Sphaerisporangium siamense strain:DSM 45784 | isolate:DSM 45784

Project description:Sphaerisporangium siamense DSM 45784 genome sequencing

| PRJNA347112 | ENA