Gasterosteus nipponicus
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ABSTRACT:
REPOSITORIES: ENA
Similar Datasets
Project description:WGS of Japan Sea stickleback from the Cape of Benkei
| PRJDB7238 | ENA
Project description:Chromosome-level genome construction of Japanese three-spined stickleback using ultra-dense linkage analysis using single-cell sequencing of sperms
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Project description:Population genomics in lake and stream stickleback populations
| PRJNA237460 | ENA
Project description:In order to identify gene expression difference between marine and freshwater stickleback populations, we compared the transcriptomes of seven adult tissues (eye, gill, heart, hypothalumus, liver, pectoral muscle, telencephalon) between a marine population sampled from the mouth of the Little Campbell river in British Columbia (LITC) and a freshwater population (Fishtrap Creek, FTC) from northern Washington. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. Four to five fish from each population were used as biological replicates for each of the seven tissues. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. All fish were of similar age and were raised in the same aquarium (salinity: 3.5 ppt), with a plastic divider separating the marine and freshwater groups. One male and four females were sampled from each population. Microarray experiments were performed in a 2-color format on custom Agilent arrays: experimental RNA samples were labeled with Cy5, and the common reference RNA sample was labeled with Cy3. The reference RNA was total RNA isolated from a large number of 7-day-post-hatch embryos from the freshwater population of Bear Paw Lake, Alaska (BEPA). One technical replicate was used for each array, and one of the hypothalamus samples (Hyp_FTC#3) was excluded from further analysis due to poor quality indicators. FTC#1 liver and LITC#2 pectoral muscle samples did not yield RNA of sufficient quality for the microarray experiment, and were also excluded from hybridization.
2011-12-30 | E-GEOD-34783 | biostudies-arrayexpress
Project description:Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to sea and freshwater conditions
| PRJNA324599 | ENA
Project description:Threespine stickleback throat Transcriptome
| PRJNA646862 | ENA