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Sulfolobus acidocaldarius DSM 639

ABSTRACT: Analysis of the genome sequence of the Sulfolobus acidocaldarius ssb-deleted strain DP-5

PROVIDER: PRJDB7507 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	BHWZ01.dat.gz	Other
	BHWZ01.fasta.gz	Fasta.gz
	BHWZ01.master.dat	Other

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Transcriptome analysis of Sulfolobus acidocaldarius DSM 639 under sugar-free and sugar-rich conditions

Project description:Sulfolobus acidocaldarius is an obligate aerobe that grows in hot and acidic environments. S. acidocaldarius have been reported to grow on a variety of organic compounds as carbon and energy sources. However, little is known about systemic elucidation of carbon utilization for biomass formation and energy metabolism in S. acidocaldarius. In this analysis, the effect of glucose on genome-wide transcriptional profiling in S. acidocaldarius DSM 639 was investigated by RNA-Seq technology.

2020-11-15 | GSE107083 | GEO

Transcription profiling of hyperthermophilic crenarchaea Sulfolobus solfataricus and Sulfolobus acidocaldarius to UV irradiation

Project description:Analysis of transcriptional response to UV irradiation in two related crenarchaea, Sulfolobus solfataricus and Sulfolobus acidocaldarius.

2007-11-21 | E-MEXP-1252 | biostudies-arrayexpress

Sulfolobus acidocaldarius phosphoproteome

Project description:Shotgun phosphoproteome of Sulfolobus acidocaldarius using PAciFIC technique. Briefly, proteins were denatured, alkylated, trypsine digestion, SCX separation Fractionated peptides were analysed on Bruker HCTultra. Data processing and bioinformatics: data from mass spectrometry were then extracted to mgf format using Bruker Data Analysis V4.0 with a MRM script, these were then were searched against the Sulfolobus acidocaldarius database (containing 2223 proteins) downloaded from NCBI in March 2010 using Phenyx V 2.6 (Genebio, Geneva). The searches were performed using parameters as follows: carbamidomethylation of cysteine (fixed modification), oxidation of methionine (variation), and phosphorylation of serine, tyrosine, threonine (variation), trypsin with 2 missed cleavages. Furthermore, other parameters such as parent, MS/MS, tolerances were set at 2.0 and 0.8 Da, respectively, whilst minimum peptide length, z-score, p-value and AC score were set at 5, 5.5, 10-5, and 5.5 respectively.

2014-04-15 | PXD000289 | Pride

Sulfolobus acidocaldarius DSM 639

Project description:Absence of di-auxie during simultaneous utilization of glucose and xylose by Sulfolobus acidocaldarius

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The genome-scale DNA-binding of FadR transcription factor in Sulfolobus acidocaldarius

Project description:This is ChIPseq result of FadR (Saci_1107), which is the only TetR family regulator presented in Sulfolobus acidocaldarius. The aim of the study is to gain insights into the function of TetR regulator by analyzing its whole genome binding sites.

2017-12-14 | GSE108039 | GEO

Sulfolobus acidocaldarius strain:98-3 | isolate:DSM 639

Project description:Sulfolobus acidocaldarius 98-3 Transcriptome - 65_3.5_log_B

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Sulfolobus acidocaldarius strain:98-3 | isolate:DSM 639

Project description:Sulfolobus acidocaldarius 98-3 Transcriptome - 75_2.4_log_A

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Sulfolobus acidocaldarius strain:98-3 | isolate:DSM 639

Project description:Sulfolobus acidocaldarius 98-3 Transcriptome - 65_1.6_stat_C

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Sulfolobus acidocaldarius strain:98-3 | isolate:DSM 639

Project description:Sulfolobus acidocaldarius 98-3 Transcriptome - 65_1.6_stat_A