Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

ABSTRACT: Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

PROVIDER: PRJEB10089 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

Project description:DNase-seq over 3 matching developmental time points in Drosophila melanogaster and Drosophila virilis embryos was performed. The aim is to assess conservation of hypersensitive regions between two distantly related species. Samples were sequenced using Illumina HiSeq.

2019-10-19 | E-MTAB-3797 | biostudies-arrayexpress

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

Project description:Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

| PRJEB40271 | ENA

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

Project description:DNase-seq over 2 matching developmental time points in Drosophila melanogaster and Drosophila virilis embryos was performed. The aim is to assess conservation of hypersensitive regions between two distantly related species. Samples were sequenced using Illumina NextSeq. This Study is an extension to the previously published Study E-MTAB-3797.

2021-05-21 | E-MTAB-9480 | biostudies-arrayexpress

Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

Project description:Chromatin accessibility mapping by DNase-seq on FACS-isolated cell populations during Drosophila melanogaster embryogenesis (6-8 hrs after egg-laying)

2018-01-29 | E-MTAB-5999 | biostudies-arrayexpress

Time course Chromatin Immunoprecipitation on Drosophila virilis embryos during embryogenesis

Project description:ChIP followed by next generation sequencing over 5 developmental time points of Drosophila virilis embryos (w[-], white eye mutation line) against 5 key mesodermal factors (Twist, Tinman, Mef2, Bagpipe and Biniou) were performed. The aim was to compare binding profiles of these 5 mesodermal factors between two Drosophila species, D. melanogaster (Zinzen et al., 2009) and D. virilis (this study). D. virilis specific antibodies were used for this purpose for 4 of the 5 factors (D. melanogaster Anti-body for Mef2 showed high specificity in D. virilis). Two biological replicates for each condition were sequenced using Illumina HiSeq.

2017-10-01 | E-MTAB-3798 | biostudies-arrayexpress

Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

Project description:Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

| PRJEB22080 | ENA

RNA profiling in Drosophila virilis and Drosophila yakuba

Project description:Gene annoation and determination of gene expression levels in Drosophila virilis and Drosophila yakuba by deep sequencing.

2015-01-29 | GSE61222 | GEO

Time course Chromatin Immunoprecipitation on Drosophila virilis embryos during embryogenesis

Project description:Time course Chromatin Immunoprecipitation on Drosophila virilis embryos during embryogenesis

| PRJEB10088 | ENA

Drosophila virilis

Project description:Drosophila virilis Genome sequencing

| PRJNA242283 | ENA

Tissue-specific DNase-seq Time Course during Drosophila melanogaster embryogenesis

Project description:Chromatin accessibility mapping by DNase-seq on whole embryo and FACS-isolated cell populations during Drosophila melanogaster embryogenesis at 2-4 hrs, 4-6 hrs, 6-8 hrs, 8-10 hrs and 10-12 hrs after egg-laying. Note that the two 8 bases long UMIs clipped from read1 and read2 are present in the FastQ file header (followed by the 8 bp long invariant sample barcode)

2020-10-30 | E-MTAB-8881 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data