Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacteria associated with acute oak decline

ABSTRACT: Identification of bacteria associated with the acute oak decline syndrome in England using Next Generation Sequencing

PROVIDER: PRJEB10225 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Analysis of oak stem lesions in Acute Oak Decline using shotgun proteomics

Project description:Acute Oak Decline (AOD) is a decline-disease currently spreading in Britain, threatening oak trees. Here, we analyze and compare the proteomes of inner bark tissue sampled from oak stems of trees symptomatic with AOD and non-symptomatic trees.

2018-02-07 | PXD004991 | Pride

Bacteria

Project description:Acute oak decline (AOD) necrotic lesion bacteria

| PRJNA342025 | ENA

Oak Bacteria

Project description:Identification of the oak microbiome

| PRJEB12457 | ENA

Genomic analysis of bacteria in the Acute Oak Decline pathobiome.

Project description: Not available

| S-EPMC6412055 | biostudies-literature

Agrilus biguttatus associated bacteria

Project description:Bacteria associated with Agrilus biguttatus sampled from English oak displaying symptoms of acute oak decline

| PRJEB10224 | ENA

Rhizosphere microbiome of cork oak

Project description:Rhizosphere microbiome of cork oak under forest decline disturbance

| PRJEB33831 | ENA

Transcriptomic analysis of Phanerochaete chrysosporium mycelium in presence of oak acetonic extractives

Project description:The transcriptome of Phanerochaete chrysosporium control mycelium was compared to the transcriptome of mycelium grown on oak acetonic extractives containing medium. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Phanerochaete chrysosporium genome sequence version 1. The aim of this study was to determine gene expression changes in Phanerochaete chrysosporium grown on oak extract with a special focus on detoxification systems.

2014-08-13 | GSE54542 | GEO

Expression diversity of Phytophthora ramorum from canyon live oak

Project description:Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. We found that phenotypes and transcriptomes change when isolates were passing through oak trees.

2014-10-24 | GSE62643 | GEO

PacBio Iso-Seq transcriptome for California Valley Oak, Quercus lobata (SW786)

Project description:Iso-Seq "full length" transcript sequences were used as one of many guides informing gene model annotation of the Valley Oak genome sequence.

2021-05-22 | GSE174827 | GEO

Disclosing proteins in cork oak plants associated with the immune response to P. cinnamomi inoculation in a long-term assay

Project description:The pathological interaction between oak trees and Phytophthora cinnamomi has implications in the cork oak decline observed over the last decades in the Iberian Peninsula. During host colonization, the phytopathogen secretes effector molecules like elicitins to increase disease effectiveness. The objective of this study was to unravel the proteome changes associated to with the cork oak immune response triggered by P. cinnamomi inoculation in a long-term assay, through SWATH-MS quantitative proteomics performed in the oak leaves. Using the Arabidopis thaliana proteome database as a reference, 424 proteins have been confidently quantified in cork oak leaves, of which 80 proteins showed a p-value below 0.05 or a fold-change greater than 2 or less than 0.5 in their levels between control and inoculated samples being considered as altered. The inoculation of cork oak roots with P. cinnamomi increased the levels of proteins associated with protein-DNA complex assembly, lipid oxidation, response to endoplasmic reticulum stress, and pyridine-containing compound metabolic process in the leaves. In opposition, several proteins associated with cellular metabolic compound salvage and monosaccharide catabolic process had significantly decreased abundances. The most significant abundance variations were observed for the Ribulose 1,5-Bisphosphate Carboxylase small subunit (RBCS1A), Heat Shock protein 90-1 (Hsp90-1), Lipoxygenase 2 (LOX2) and Histone superfamily protein H3.3 (A8MRLO/At4G40030) revealing a pertinent role for these proteins in the host-pathogen interaction mechanism. This work represents the first SWATH-MS analysis performed in cork oak plants inoculated with P. cinnamomi and highlights host proteins that have a relevant action in the homeostatic states that emerge from the interaction between the oomycete and the host in the long term and in a distal organ.

2021-01-04 | PXD021455 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data