Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana bacterial culture collections (WGS)

ABSTRACT: Arabidopsis thaliana culture collections of leaf- and root-associated bacteria (WGS raw reads)

PROVIDER: PRJEB11584 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Arabidopsis thaliana bacterial culture collections (NatComs 16S)

Project description:Arabidopsis thaliana culture collections of leaf- and root-associated bacteria (Natural Communities 16S rRNA data)

| PRJEB11545 | ENA

Arabidopsis thaliana bacterial culture collections (SynComs 16S)

Project description:Arabidopsis thaliana culture collections of leaf- and root-associated bacteria (Synthetic Communities 16S rRNA data)

| PRJEB11583 | ENA

Time course microarray analysis during xylem cell differentiation in leaf-disk culture system

Project description:We established a novel in vitro culture system, in which vascular development can be induced in Arabidopsis thaliana leaf-disks using the specific GSK3s inhibitor. To elucidate gene expression profiles during vascular development, we performed GeneChip analysis using our newly established culture system.

2014-12-31 | GSE61941 | GEO

A transcript profile of Medicago truncatula 2HA tissue culture with auxin treatment

Project description:Leaf explants of the superembryogenic Medicago truncatula line 2HA were treated with auxin (1-naphthaleneacetic acid) for one week to induce the formation of roots (Imin et al J Exp Bot 58:439-451). Gene expression in the leaves and the NAA treated tissue cultures was compared to identify transcripts expressed during the commitment to root formation in tissue culture. We have used the Affymetrix Medicago Genome Array GeneChip to compared gene expression in Medicago truncatula leaves and leaf explants that have been cultured for one week on NAA, to identify genes expressed during the commitment to root formation in tissue culture. Keywords: Cell type comparison

2007-10-01 | GSE8138 | GEO

Bacteria

Project description:Arabidopsis thaliana root-derived microbiota culture collections Genome sequencing and assembly

| PRJNA297942 | ENA

Bacteria

Project description:Arabidopsis thaliana leaf-derived microbiota culture collections Genome sequencing and assembly

| PRJNA297956 | ENA

Transcriptome-wide analysis of wounded region gene expression using detached first-pair rosette leaves before culture (time 0) and 2 day after culture (DAC) from 12-day-old Col-0 seedlings

Project description:To reveal the molecular mechanism during de novo root regeneration from Arabidopsis leaf explants cultured on B5 medium without exogenous hormones, we carried out an RNA-seq experiment using detached leaf explants with partial petiole before culture (i.e. time 0) and 2 d after culturing (DAC) from12-d-old Col-0 seedlings. Gene expression of the wounded region (including the partial petiole and some surrounding tissues), which comprises regeneration-competent cells, was analyzed.

2019-10-22 | GSE139165 | GEO

Transcription profiling of Medicago truncatula 2HA tissue culture with auxin treatment

2008-06-17 | E-GEOD-8138 | biostudies-arrayexpress

Bacterial WGS validation panel

Project description:Bacterial WGS validation panel

| PRJNA341407 | ENA

Saccharomyces cerevisiae deletion collections chemogenomic screen with sr7575

Project description:Growth assay in the presence of a toxic chemical (sr7575) that uses the barcoded collections of yeast gene deletions (haploid, diploid, DamP) to identify deletion strains that are hypersensitive to the drug.

2015-12-09 | GSE60934 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data