Project description:Three oesophageal tissue derived cell lines, one from a normal tissue (HET1A) and two from tumour tissues (OE33 and OE199) were mixed with same number of each cell type in the same tube to get a mixed population. The C1 platform (Fluidigm) was used to capture single-cells and scATAC-seq protocols from Fluidigm ScriptHub is then used to generate the sequencing library. A single-cell ATAC-seq Bioinformatics pipeline is then developed to deconvolute the cells into their respective cell types.

2018-10-01 | E-MTAB-6116 | biostudies-arrayexpress

ATAC-seq of oesophageal adenocarcinoma patient samples

Project description:ATAC-seq of oesophageal adenocarcinoma patient samples

| PRJEB34929 | ENA

Bulk ATAC-seq experiments on human samples from normal gastric cardia, normal oesophageal submucosal glands and Barrett's oesophagus tissue

Project description:Profiling open chromatin in different tissue types around the gastro-oesophageal junction to allow for clustering of samples and investigation of transcription factor binding site motif enrichment.

2021-08-24 | E-MTAB-10044 | biostudies-arrayexpress

RNAseq of Oesophageal Adenocarcinoma Cell Lines

Project description:rna sequencing of Oesophageal Adenocarcinoma Cell lines: OACP4, OE19, FLO-1, SK-GT-4, ESO26, OE33, ESO51, OACM5.1 C, JH-EsoAd1

2022-06-01 | GSE153096 | GEO

Single-cell ATAC-seq of a mixture of three oesophageal tissue (HET1A, OE33, OE19) derived cell lines

Project description:Single-cell ATAC-seq of a mixture of three oesophageal tissue (HET1A, OE33, OE19) derived cell lines

| PRJEB22922 | ENA

RNAseq of Oesophageal Adenocarcinoma Cell Lines

Project description:RNAseq of Oesophageal Adenocarcinoma Cell Lines

| PRJNA641420 | ENA