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CNV detection in targeted NGS panel data

ABSTRACT: CNV detection in targeted NGS panel data

PROVIDER: PRJEB18961 | ENA |

REPOSITORIES: ENA

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CNV detection in targeted NGS panel data

Project description:The aim of this study was to compare copy-number-variation (CNV) detection methods for targeted NGS panel data in a clinical diagnostic setting. We present targeted NGS panel data from 170 samples that were processed using the TruSight(TM) Cancer (TSC) panel (Illumina, San Diego, CA, USA), which targets 94 genes and 284 SNPs associated with a predisposition towards cancer. The samples are enriched for CNVs in the genes of interest. All CNVs have previously been assessed with MLPA and can therefore be considered as confirmed.

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Chromosomal microarray analysis for validation of the NGS-based CNV detection results in clinical samples

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