Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Texas Bay Metagenomes metagenomic assembly

ABSTRACT: EMG produced TPA metagenomics assembly of the Oyster and water samples from Texas bays. (Texas Bay Metagenomes) data set

PROVIDER: PRJEB22525 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Texas Bay Metagenomes

Project description:Oyster and water samples from Texas bays.

| PRJEB16362 | ENA

Arctic Ocean metagenomes metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Arctic Ocean metagenomes from HLY1502 (Arctic Ocean metagenomes) data set

| PRJEB22522 | ENA

Axial Seamount Metagenomes 2011-2012 metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Metagenomes and metatranscriptomes from the diffuse hydrothermal vents of Axial Seamount, 2011-2012 (Axial Seamount Metagenomes 2011-2012) data set

| PRJEB22496 | ENA

Mid-Cayman Rise FS848 and FS856 metagenomes metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Subseafloor microbes at Mid-Cayman Rise (Mid-Cayman Rise FS848 and FS856 metagenomes) data set

| PRJEB22510 | ENA

Acute host transcriptonal response to A/Texas/36/91 influenza and A/Texas/36/91 influenza containing the NS1 gene from r1918 in A549 cells

Project description:The “Spanish influenza” of 1918 claimed an unprecedented number of lives, yet the determinants of virulence for this virus are still not fully understood. Here, we used functional genomics and an in vitro human lung epithelial cell infection model to define the global host transcriptional response to the eight-gene 1918 virus. To better understand the role of the 1918 virus NS1 gene, we evaluated the host response to A/Texas/36/91 (a seasonal isolate of human influenza virus) and a reassortant of A/Texas/36/91 containing the 1918 NS1 gene.

2012-05-14 | GSE37829 | GEO

Acute host transcriptonal response to A/Texas/36/91 influenza and A/Texas/36/91 influenza containing the NS1 gene from r1918 in A549 cells

Project description:The M-bM-^@M-^\Spanish influenzaM-bM-^@M-^] of 1918 claimed an unprecedented number of lives, yet the determinants of virulence for this virus are still not fully understood. Here, we used functional genomics and an in vitro human lung epithelial cell infection model to define the global host transcriptional response to the eight-gene 1918 virus. To better understand the role of the 1918 virus NS1 gene, we evaluated the host response to A/Texas/36/91 (a seasonal isolate of human influenza virus) and a reassortant of A/Texas/36/91 containing the 1918 NS1 gene. A549 cells were infected at a MOI=2 with either A/Texas/36/91 (Tx/91) or A/Texas/36/91 (Tx/91) containing the NS1 gene from r1918 influenza. Virus was allowed to bind to cells for 1 h at 4M-BM-0C in serum-free infection medium supplemented with trypsin (1 g/ml). Mock-infected cells were treated with allantoic fluid instead of virus. Three replicate wells were used for each infection condition at each time point. Cells were harvested for array analysis at 2, 6, and 24hr post-infection. Cells from three individual cultures were pooled for each condition for microarray.

2012-05-13 | E-GEOD-37829 | biostudies-arrayexpress

Duke-UNC-Texas-EBI ENCODE expression project

Project description:These samples are being analyzed by the Duke-UNC-Texas-EBI ENCODE consortium. Expression from these cell types will compared to three whole genome open chromatin methodologies: DNaseI hypersensitivity (DNase-seq), Formaldehyde-Assisted Isolation of Regulatory elements (FAIRE-seq), and Chromatin Immunoprecipitation (ChIP-seq) . For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

2009-04-23 | GSE15805 | GEO

stool metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the stool samples Raw sequence reads (stool) data set

| PRJEB22362 | ENA

BASE metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the BASE – Biomes of Australian Soil Environments (BASE) data set

| PRJEB22503 | ENA

jcvi_gos_circumnavigation metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Core genomes of cosmopolitan surface ocean plankton (jcvi_gos_circumnavigation) data set

| PRJEB22394 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data