Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of Candida intermedia growing in different media

ABSTRACT: RNA-seq of Candida intermedia growing in different media

PROVIDER: PRJEB26170 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq of Candida intermedia growing in different media

Project description:The objective of this project is to investigate the gene expression pattern relevant for the utilization of different carbon sources in the yeast Candida intermedia CBS141442, as well as assess the effect of the presence of oxygen.

2018-06-29 | E-MTAB-6670 | biostudies-arrayexpress

[Candida] intermedia

Project description:[Candida] intermedia overview

| PRJNA492511 | ENA

[Candida] intermedia

Project description:NBRP: Genome sequencing of Candida intermedia JCM 1607

| PRJDB3612 | ENA

Candida intermedia genome assembly

Project description:Assembly of two Candida intermedia strains CBS 141442 and PYCC 4715

| PRJEB14359 | ENA

Role of OxyR in Prevotella intermedia

Project description:Wild type Prevotella intermedia OMA14 strain (V3203) was used to compare to the OxyR-deficient strain (V3147).

2021-03-31 | GSE168003 | GEO

Next Generation Sequencing of MCF7 cells exposed to conditioned media from growing or senescent fibroblasts

Project description:MCF7 cells were exposed for 48 hours to conditioned media from growing or senescent fibroblasts before harvesting of cell pellets for RNA extraction.

2022-03-18 | GSE198660 | GEO

Role of iron in gene regulation in Prevotella intermedia

Project description:Role of iron in gene regulation in Prevotella intermedia

2023-06-01 | GSE168982 | GEO

Transcriptional landscape of Candida parapsilosis

Project description:We used next generation sequencing (RNA-seq) to determine the transcriptional profile of C. parapsilosis growing in several conditions including different media, temperatures and oxygen concentrations.

2011-11-30 | GSE32714 | GEO

MCF7 cells exposed to conditioned media from growing or senescent fibroblasts

Project description:MCF7 cells exposed to conditioned media from growing or senescent fibroblasts

| PRJNA816455 | ENA

Identification of microRNAs in Caragana intermedia by high-throughput sequencing and expression analysis of 12 microRNAs and their targets under salt stress

Project description:MicroRNAs (miRNAs) are endogenous small RNAs that play important roles in various biological and metabolic processes in plants. Caragana intermedia is an important ecological and economic tree species that is prominent in the desert environment of west and northwest China. To date, no investigation into C. intermedia miRNAs has been reported. In this study, high-throughput sequencing of small RNAs was performed to identify both conserved and novel miRNAs, and also their target mRNA genes in C. intermedia. Based on sequence similarity and hairpin structure prediction, 132 putative conserved miRNAs (12 of which were confirmed to form hairpin precursors) belonging to 31 known miRNA families were identified. Ten novel miRNAs (including the miRNA* sequences of three novel miRNAs) were also discovered. The expression of 12 miRNAs was validated in different tissues, and the 12 miRNAs were further assessed by qRT-PCR after salt treatment. Furthermore, 36 potential target genes of 17 known miRNA families and two potential target genes of one novel miRNA were predicted, and some target genes were also assessed by qRT-PCR after salt treatment. Our study provides a basic catalog of miRNAs and their targets, which will promote further understanding of the important roles of miRNAs in C. intermedia and in other species of the leguminous genus, Caragana. Examination of small RNA expression profiling in three-weeks-old seedings of Caragana intermedia.

2015-12-31 | E-GEOD-44819 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data