Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

KPC-2 producing Klebsiella quasipneumoniae

ABSTRACT: First report of KPC-2-producing Klebsiella quasipneumoniae in Saudi Arabia by whole-genome sequencing

PROVIDER: PRJEB30599 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

KPC-producing Enterobacteriaceae

Project description:KPC-producing Enterobacteriaceae in Victoria, Australia

| PRJNA397262 | ENA

Genome Sequences of Clinical Isolates of NDM-1-Producing Klebsiella quasipneumoniae subsp. similipneumoniae and KPC-2-Producing Klebsiella quasipneumoniae subsp. quasipneumoniae from Brazil.

Project description: Not available

| S-EPMC7171209 | biostudies-literature

antigenic KPC model_bulk pancreas RNASeq

Project description:We report the application of bulk RNAseq of live cells from pancreas of KPC or KPC-OG genetic mice at 6 weeks of age. These sponteneous tumors were unperturbed otherwise until timepoint.

2020-01-01 | GSE131602 | GEO

Differentially expressed genes in KPC Cxcr2 KO vs KPC mouse PDAC

Project description:Recently, Bailey et al (2016, Nature) defined four subtypes of pancreatic cancer that are associated with distinct histopathological characteristics and differential survival, namely, Squamous, Pancreatic Progenitor, Immunogenic, and ADEX (Aberrantly Differentiated Endocrine eXocrine). We set out to assess by RNASeq whether loss of CXCR2 was significantly associated with a specific PDAC subtype. Pancreatic tumors were harvested from KPC or KPC Cxcr2-/- mice at endpoint (n=5 v 5), RNA prepared, and RNASeq analysis carried out. Reads were analysed using the bcbio-nextgen framework (https://bcbio-nextgen.readthedocs.org/en/latest/). After quality control and adaptor trimming, reads were aligned to the mouse genome build (UCSC mouse mm10) using STAR. Counts for known genes were generated using the function featureCounts in the R/Bioconductor package \Rsubread\. The R/Bioconductor package edgeR was used to identify differentially expressed genes.

2018-03-31 | E-MTAB-4659 | biostudies-arrayexpress

Klebsiella quasipneumoniae subsp. quasipneumoniae plasmid

Project description:Klebsiella quasipneumoniae subsp. quasipneumoniae plasmid

| PRJEB53621 | ENA

Klebsiella quasipneumoniae subsp. quasipneumoniae

Project description:Klebsiella quasipneumoniae subsp. quasipneumoniae Genome sequencing and assembly

| PRJNA499048 | ENA

First dataset - bacterial proteome of carbapanemase-producing Escherichia coli and other Enterobacteriaceae under antibiotic pressure

Project description:Antibiotic resistance associated with the expression of the clinically significant carbapenemases, IMP, KPC, and NDM and OXA-48 in Enterobacteriaceae is emerging as a worldwide calamity to health care. In Australia, IMP-producing Enterobacteriaceae is the most prevalent carbapenemase-producing Enterobacteriaceae (CPE). Genomic characteristics of such carbapenemase-producing Enterobacteriaceae (CPE) are well described, but the corresponding proteome is poorly characterised. We have thus developed a method to analyse dynamic changes in the proteome of CPE under antibiotic pressure. Specifically, we have investigated the effect of meropenem at sub-lethal concentrations to develop a better understanding of how antibiotic pressure leads to resistance. Escherichia coli, producing either NDM, IMP or KPC type carbapenemase were included in this study, and their proteomes were analysed in growth conditions with or without meropenem.

2018-07-11 | PXD008019 | Pride

Whole-Genome Sequencing of Ceftazidime-Avibactam resistant KPC-producing Klebsiella pneumoniae strains

Project description:Emergence of Ceftazidime-Avibactam resistant KPC-producing K. pneumoniae (KPC-Kp) during ceftazidime-avibactam-based antimicrobial treatment.

| PRJEB21871 | ENA

Klebsiella quasipneumoniae subsp. quasipneumoniae strain:A708

Project description:Klebsiella quasipneumoniae subsp. quasipneumoniae strain:A708 Genome sequencing

| PRJNA477596 | ENA

Klebsiella quasipneumoniae

Project description:Klebsiella quasipneumoniae overview

| PRJNA292340 | ENA