Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development

ABSTRACT: Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development

PROVIDER: PRJEB41527 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development

Project description:Hi-C analysis of the chromosome organization during sporulation in Streptomyces venezuelae. The experiment includes the effect of ParA, ParB, SMC, and HupS proteins on the chromosome structure.

2020-12-09 | E-MTAB-9810 | biostudies-arrayexpress

Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development.

Project description: Not available

| S-EPMC8410768 | biostudies-literature

Identifying Lsr2 binding sites in Streptomyces venezuelae

Project description:The goal of this work was to determine where Lsr2 binds within the S. venezuelae chromosome, and to differentiate between direct versus indirect effects by comparing our ChIP-seq results with RNA-seq results

2018-06-09 | GSE115538 | GEO

CpG island mediated linear and spatial gene partitioning (RNA-seq)

Project description:CpG island mediated linear and spatial gene partitioning (RNA-seq)

| PRJNA319992 | ENA

ChIP-seq experiment of HupS-FLAG binding to Streptomyces venezuelae chromosome in wild type and SMC knockout strain

Project description:We studied the binding of HupS protein to Streptomyces venezuelae chromosome during development of aerial hyphae (14 hour of growth) using HupS-FLAG protein. Additionally investigated the role of SMC protein in HupS DNA binding using smc deletion strain.

2021-05-28 | E-MTAB-9821 | biostudies-arrayexpress

ChIP-seq experiment of SMC-FLAG binding to Streptomyces venezuelae chromosome in wild type and parB knockout strain

Project description:We studied the binding of SMC protein to Streptomyces venezuelae chromosome during development of aerial hyphae (14 hour of growth) using SMC-FLAG protein. Additionally investigated the role of ParB protein in SMC DNA binding using parB deletion strain.

2021-05-28 | E-MTAB-9822 | biostudies-arrayexpress

CpG island mediated linear and spatial gene partitioning (other data sets)

Project description:CpG island mediated linear and spatial gene partitioning (other data sets)

| PRJNA319990 | ENA

Alterations in chromosome spatial compartmentalization classify prostate cancer progression [array]

Project description:Through a systematic analysis of chromosome conformation capture in a cohort of cells that model cancer progression, San Martin et.al. find that rearrangement of the 3D genome structure in prostate cancer is a potential mechanism for disease exacerbation and that genome-wide compartment identity can classify cancer according to progression

2021-05-01 | GSE172098 | GEO

CpG island mediated linear and spatial gene partitioning (pA+ RNA-seq profile)

Project description:CpG island mediated linear and spatial gene partitioning (pA+ RNA-seq profile)

| PRJNA319996 | ENA