Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Isolation, identification and categorisation of members of the Barley Rhizosphere microbiota

ABSTRACT: Barley Rhizosphere SynCom

PROVIDER: PRJEB42773 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Barley RHM microbiota

Project description:Root hair mutations displace the barley rhizosphere microbiota

| PRJEB15634 | ENA

Genome-Wide analysis of gene expression responses to waterlogging stress in roots of barley (Hordeum vulgare L.)

Project description:Waterlogging is a major abiotic stress causing oxygen depletion and carbon dioxide accumulation in the rhizosphere. Barley is more susceptible to waterlogging stress than other cereals. To gain a better understanding of the effect of waterlogging stress in barley, we carried out a genome-wide gene expression analysis in roots of Yerong and Deder2 barley genotypes under waterlogging and control (well-watered) conditions by RNA-Sequencing, using Illumina HiSeq™ 4000 platform.

2020-02-14 | GSE144077 | GEO

Genome sequencing of 22 Pseudomonas isolates from the rhizosphere of the barley variety Chevallier and 20 Psuedomonas isolates from the rhizosphere of the barley variety Tipple.

Project description:Chevallier is a heritage english landrace of barley first planted in 1820 while Tipple is modern cultivar of barley released in 2004. Pseudomonas strains were isolated from the rhizospheres of the two varieties and 22 and 20 of the most phylogenetically distinct ones were sequenced to find out the difference in genotypes preferentially selected in the rhizospheres of the two cultivars.

2023-06-15 | E-MTAB-12917 | biostudies-arrayexpress

Rhizosphere Soil of Tibet Barley

Project description:Rhizosphere Soil of Tibet Barley Raw sequence reads

| PRJNA669607 | ENA

RNA-Seq of Pseudomonas fluorescens SBW25 isolated from axenic rhizospheres of the barley varieties Chevallier and Tipple one and five days post-inoculation.

Project description:Pseudomonas fluorescens SBW25 cultures were inoculated into the rhizospheres of barley seedlings of the Chevallier and Tipple varieties growing in axenic cultures. Bacterial cells were collected from the rhizosphere one and five days after inculation and RNA extracted from them. Culture used for inoculation (but not exposed to the rhizospheres) were used as control. The aim of the experiment was to determine the changes in gene expression of P. fluorescens SBW25 upon exposure to barley rhizosphere and also to determine if the rhizospehres of the two varieties of Barley had different effects on gene expression of P. fluorescens SBW25.

2023-05-15 | E-MTAB-12918 | biostudies-arrayexpress

Barley rhizosphere 16S

Project description:Elevated atmospheric CO2 concentration decreases prokaryotic diversity in the rhizosphere of barley (Hordeum vulgare L.)

| PRJEB15090 | ENA

Barley microbiota

Project description:Structure and functions of the bacterial root microbiota in wild and domesticated barley and signatures of positive selection in the rhizosphere metagenome

| PRJEB5860 | ENA

Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota.

Project description: Not available

| S-EPMC8614190 | biostudies-literature

Barley B1K microbiota

Project description:A footptrint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota

| PRJEB35359 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method.

2014-09-12 | GSE61338 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data