Project description:Porcine 60K BeadChip genotyping arrays (Illumina) are increasingly being applied in pig genomics to validate SNPs identified by re-sequencing or assembly-versus-assembly method. Here we report that more than 98% SNPs identified from the porcine 60K BeadChip genotyping array (Illumina) were consistent with the SNPs identified from the assembly-based method. This result demonstrates that whole-genome de novo assembly is a reliable approach to deriving accurate maps of SNPs. To compare SNPs identified by genotyping arrays and de novo assembly method, we genotyped 10 pig breeds by porcine 60K BeadChip genotyping array (Illumina), including 1 berkshire pig, 1 hampshire pig, 1 landrace pig, 1 large white pig,1 piÃ©train pig, 1 bamei pig,1 jinhua pig, 1 meishan pig, 1 rongchang pig and 1 Tibetan wild boar.

2016-07-05 | E-GEOD-83910 | biostudies-arrayexpress

Spilosoma obliqua nucleopolyhedrosis virus strain:NPV | isolate:SpobNPV.IIPR

Project description:Genome sequencing and assembly of SpobNPV (Spilosoma obliqua nucleopolyhedrosis virus)

| PRJNA327781 | ENA

ilSpiLutu1 alternate haplotype

Project description:Spilarctia lutea (buff ermine) genome assembly, ilSpiLutu1, alternate haplotype

| PRJEB47510 | ENA

ilYpoSedl1 alternate haplotype

Project description:Yponomeuta sedellus (grey ermine) genome assembly, ilYpoSedl1, alternate haplotype

| PRJEB51793 | ENA