Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bisulfite-seq in Arabidopsis thaliana Col and hcr2 mutant

ABSTRACT: Bisulfite-seq in Arabidopsis thaliana Col and hcr2 mutant

PROVIDER: PRJEB46010 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Bisulfite-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:DNA-prep of Col and hcr2 mutant from seedling and bud sample. DNA was extracted using DNeasy Plant Mini Kit (Qiagen 69104, USA). Library construction and bisulfite conversion was performed using EZ DNA Methylation-Gold kit (ZYMO). DNA libraries are sequenced on the DNBseq platform (BGI, Hong Cong).

2022-03-23 | E-MTAB-10657 | biostudies-arrayexpress

RNA-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:RNA-seq in Arabidopsis thaliana Col and hcr2 mutant

| PRJEB46563 | ENA

ATAC-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:ATAC-seq in Arabidopsis thaliana Col and hcr2 mutant

| PRJEB46552 | ENA

H3K4me3-ChIP-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:H3K4me3-ChIP-seq in Arabidopsis thaliana Col and hcr2 mutant

| PRJEB46008 | ENA

Whole genome bisulfite sequencing of five-week-old Arabidopsis thaliana (ecotype Col-0) plants from water and jasmonic acid treated seedlings.

Project description:Treatment of Arabidopsis thaliana (ecotype Col-0) seedlings with jasmonic acid (JA) elicits long-term induced resistance (IR) against the chewing herbivore Spodoptera littoralis. We used whole genome bisulfite-seq to profile the methylome associated with this long-lasting JA-IR.

2022-11-07 | GSE163262 | GEO

Bisulfite (methylome) sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_BS-seq]

Project description:Col-0 floral stem was grafted on the msh1 mutant (Col-0/msh1); on the dcl2,3,4,msh1 quadruple mutant (Col-0/dcl2,3,4,msh1); on Col-0 (Col-0/Col-0). Seeds were collected from the grafted Col-0 scion after grafts were established. Seed coming from the graft then were grown on the peat mix, leaf tissue was collected at the bolting and used for the bisulfite sequencing (methylome). Tissue from the msh1 mutant and dcl2,3,4,msh1 quadruple mutants used as rootstocks was similarly collected at the bolting stage and used for the bisulfite sequencing.

2020-09-20 | GSE152564 | GEO

RNA-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:RNA-prep of Col and hcr2 mutant from seedling and bud sample. RNA extracted by Trizol and cDNA was synthesized by using the ScriptSeq v2 RNA-seq Library Preparation Kit (SSV21124, Epicentre). ScriptSeq Index PCR Primers (RSBC10948, Epicentre) were used for library construction.

2022-03-23 | E-MTAB-10791 | biostudies-arrayexpress

Transcriptome of Arabidopsis thaliana mem1-1 mutant

Project description:Transcriptome of Arabidopsis thaliana mem1-1 mutant and Col-0 under normal and 200ppm MMS treatment conditions, respectively

2021-08-04 | GSE181302 | GEO

ATAC-seq in Arabidopsis thaliana Col and hcr2 mutant

Project description:ATAC-seq of Col and hcr2 mutant from seedling and bud sample. Tagmentation was performed using the Tag DNA enzyme & buffer kit (Illumina, 20034210). Nextera DNA CD Index primers were used for library construction. The indexed libraries were subjected to paired-end 50-bp sequencing using an Illumina HiSeqX instrument (Microgen, Korea).

2022-03-23 | E-MTAB-10790 | biostudies-arrayexpress

Arabidopsis thaliana ecotype Col-0 versus T-DNA mutant sir1-1

Project description:Arabidopsis thaliana Col-0 plants were compared to sir1-1 T-DNA insertion mutants to investigate transcript levels of sulfur metabolism related genes under standard conditions.

2010-03-12 | GSE20670 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data