Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Modulation of food microbiome by processing of apple fruits

ABSTRACT: Modulation of food microbiome by processing of apple fruits

PROVIDER: PRJEB48252 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Gene expression in Rhagoletis pomonella and R. zephyria transplanted into snowberry and apple fruits

Project description:Gene expression in feeding larvae reciprocally transplanted into snowberry and apple fruits

2015-10-01 | GSE66975 | GEO

Identification of differentially methylated regions between leaves and young fruits of the apple GDDH13

Project description:The main objective of this analysis was to sequence the epigenome of the Apple (Malus domestica) doubled haploid 'Golden Delicious' tree. Our secondary objective was to identify differentially methylated regions between DNA purified from leaves and young fruits.

2016-09-17 | GSE87014 | GEO

The infected postharvest apple fruits

Project description:The postharvest apple fruits infected by Penicillium expansum Transcriptome

| PRJNA797890 | ENA

Large scale analysis of apple mealiness within IM apple progeny

Project description:Based on sensorial analysis over 4 years, 6 apple genotypes with contrasted fruit texture (mealy or not) were selected among a progeny. Apple samples were collected at 100 days after flowering (100 DAF), harvest (H), after 2 and 4 months of cold storage (60DAH and 120DAH respectively). 6 apple hybrids were analysed in dye-switch. Biological replicates are fruits from 2 to 4 different harvest years. Each mealy hybrid was compared to a non-mealy hybrid from the same harvest year in 12 dye-swap 3 pairs at 4 four time points).

2015-06-25 | E-GEOD-59947 | biostudies-arrayexpress

Transcriptomic profiling of apple seeds

Project description:Comparison of seed of two different types of developing fruits in apple: central and lateral. Our objective is to find transcriptomic signatures that allow to explain the physiological drop of young lateral fruitlets Apple seeds transcriptomes were generated by deep sequencing by triplicate from seeds collected from central and lateral fruitlets at 20 days after petal fall (DAPF)

2014-11-21 | E-GEOD-62415 | biostudies-arrayexpress

Transcriptomic profiling of apple seeds

2014-11-21 | GSE62415 | GEO

Modulation of microRNA processing by 5-lipoxygenase

Project description:Modulation of microRNA processing by 5-lipoxygenase

| PRJNA640805 | ENA

Transcriptional Profiling of Apple (Malus x domestica Borkh) Floral Induction in Shoot Apical Meristems

Project description:Effect of the presence of fruits on the expression of genes possibly involved in floral induction in the terminal meristem of spur bourse shoot. Investigation on mecanisms involved in Biennial Bearing in mature apple trees cultivar Royal Gala.

2016-03-02 | GSE64646 | GEO

Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice

Project description:Escherichia coli O157:H7 has caused serious outbreaks of foodborne illness via transmission in a variety of food vehicles, including unpasteurized apple juice, dried salami, and spinach. To understand how this pathogen responds to the multiple stresses of the food environment, we compared global transcription patterns after exposure to apple juice. Transcriptomes of mid-exponential and stationary phase cells were evaluated after 10 minutes in model apple juice (pH3.5) using microarrays probing 4,886 ORFs. Significant changes in gene expression were determined using R/MAANOVA and the Fs test. A total of 331 ORFs were significantly induced upon exposure of cells to model apple juice and included genes involved in the acid and osmotic stress responses as well as the oxidative stress response and envelope stress. Genes involved in the acid and osmotic stress responses, including asr, osmC, osmB, and osmY were significantly induced in response to model apple juice. Genes involved in the envelope stress response, known to be controlled by CpxR (cpxP, degP, and htpX), were significantly induced 2 to 15 fold upon exposure to apple juice, independent of growth phase. Inactivation of CpxRA resulted in a significant decrease in survival of O157:H7 in model apple juice compared to the isogenic parent strain. Of the 331 ORFs induced in model apple juice, 104 are O157-specific ORFs, including those encoding type three secretion effectors espJ, espB, espM2, espL3 and espZ. By elucidating the response of O157:H7 to acidic foods, we hope to gain insights into how this pathogen is able to survive in food matrices and how exposure to foods affects subsequent transmission and virulence. Keywords: stress

2008-08-01 | GSE11052 | GEO

Modulation of apple leaf trancriptome by Acibenzolar-S-methyl (ASM)

Project description:Investigation of whole genome gene expression level changes in leaves of apple seedlings (Golden delicious) 3 days after treatment by Bion 50WG (ASM) versus water.

2024-04-01 | GSE262538 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data