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Next Generation Annotation of prokarotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011

ABSTRACT: Next Generation Annotation of prokarotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011

OTHER RELATED OMICS DATASETS IN: GSE44083

PROVIDER: PRJNA188524 | ENA |

REPOSITORIES: ENA

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Next Generation Annotation of prokarotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011

Project description:With a view to re-annotate the genome sequence of the nitrogen fixing bacterium Sinorhizobium meliloti, we generated oriented sequences of transcripts. To cover a large number of expressed genes we prepared RNA from bacteria grown in three very different physiological conditions including bacteria grown in liquid cultures (in both exponential and stationary growth phases) and from 10-day-old nodules in which bacteria were differentiated in nitrogen fixing bacteroids. The transcripts sequences were then integrated into EuGene-P, a new prokaryotic genome annotation tool able to integrate high throughput data including oriented RNA-Seq data directly into the prediction process, which led to the production of an accurate and complete annotation of the genome of S. meliloti strain 2011.

2013-04-01 | GSE44083 | GEO

Sinorhizobium meliloti 2011

Project description:Sinorhizobium meliloti 2011 Genome sequencing

| PRJNA187276 | ENA

Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.

Project description: Not available

| S-EPMC3738161 | biostudies-literature

Sinorhizobium meliloti 2011

Project description:Sinorhizobium meliloti 2011 methylation detection - Rm2011-GD-ZIII-1 epigenomics

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Project description:Sinorhizobium meliloti 2011 methylation detection - BM908-GD-FL-1 epigenomics

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Project description:Sinorhizobium meliloti 2011 methylation detection - Rm2011-GD-FL-3 epigenomics

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Project description:Sinorhizobium meliloti 2011 methylation detection - Rm2011-GD-FL-1 epigenomics

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Project description:Sinorhizobium meliloti 2011 methylation detection - Rm2011-GD-FL-2 epigenomics

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Project description:Sinorhizobium meliloti 2011 methylation detection - Rm2011-GD-ZII-1 epigenomics

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