Genomics

Dataset Information

12

Anas platyrhynchos


ABSTRACT: Anas platyrhynchos Transcriptome or Gene expression

ORGANISM(S): Anas platyrhynchos  

PROVIDER: PRJNA194464 | ENA |

REPOSITORIES: ENA

Dataset's files

Source:
Action DRS
SRR797835_1.fastq.gz Fastqsanger.gz
SRR797835_2.fastq.gz Fastqsanger.gz
SRR797836_1.fastq.gz Fastqsanger.gz
SRR797836_2.fastq.gz Fastqsanger.gz
SRR797837_1.fastq.gz Fastqsanger.gz
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Publications

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species.

Huang Yinhua Y   Li Yingrui Y   Burt David W DW   Chen Hualan H   Zhang Yong Y   Qian Wubin W   Kim Heebal H   Gan Shangquan S   Zhao Yiqiang Y   Li Jianwen J   Yi Kang K   Feng Huapeng H   Zhu Pengyang P   Li Bo B   Liu Qiuyue Q   Fairley Suan S   Magor Katharine E KE   Du Zhenlin Z   Hu Xiaoxiang X   Goodman Laurie L   Tafer Hakim H   Vignal Alain A   Lee Taeheon T   Kim Kyu-Won KW   Sheng Zheya Z   An Yang Y   Searle Steve S   Herrero Javier J   Groenen Martien A M MAM   Crooijmans Richard P M A RPMA   Faraut Thomas T   Cai Qingle Q   Webster Robert G RG   Aldridge Jerry R JR   Warren Wesley C WC   Bartschat Sebastian S   Kehr Stephanie S   Marz Manja M   Stadler Peter F PF   Smith Jacqueline J   Kraus Robert H S RHS   Zhao Yaofeng Y   Ren Liming L   Fei Jing J   Morisson Mireille M   Kaiser Pete P   Griffin Darren K DK   Rao Man M   Pitel Frederique F   Wang Jun J   Wang Jun J   Li Ning N  

Nature genetics 20130609 7


The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome analyses to investigate immune-related genes. Our data indicate that the duck possesses a contractive immune gene repertoire, as in chicken and zebra finch, and this repertoire has been shaped through lineage-specific duplications. We identify genes that are responsive to influenza A viruses using the lung transcriptomes of control ducks a  ...[more]

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