Project description:Whole Genome Metabolism of "Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)"
This is a whole genome metabolism model of Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8).
This model has been automatically generated by the SuBliMinaL Toolbox
and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models
project and is currently hosted on BioModels Database
and identified by: BMID000000141538
Other models with the same genus include BMID000000007459 BMID000000007460 BMID000000007461 BMID000000007462 BMID000000007463 BMID000000007464 BMID000000007465 BMID000000007466 BMID000000007467 BMID000000007468 BMID000000007469 BMID000000007470 BMID000000007471 BMID000000007472 BMID000000007473 BMID000000007474 BMID000000059307 BMID000000059308 BMID000000059309 BMID000000059310 BMID000000059311 BMID000000059312 BMID000000059313 BMID000000059314 BMID000000059315 BMID000000059316 BMID000000059317 BMID000000059318 BMID000000059319 BMID000000059320 BMID000000059321 BMID000000059322 BMID000000059323 BMID000000059324 BMID000000059325 BMID000000059326 BMID000000059327 BMID000000059328 BMID000000059329 BMID000000059330 BMID000000059331 BMID000000059332 BMID000000059333 BMID000000059334 BMID000000059335 BMID000000059336 BMID000000059337 BMID000000059338 BMID000000059339 BMID000000059340 BMID000000059341 BMID000000059342 BMID000000059343 BMID000000059344 BMID000000059345 BMID000000059346 BMID000000059347 BMID000000059348 BMID000000059349 BMID000000059350 BMID000000059351 BMID000000059352 BMID000000059353 BMID000000059354 BMID000000059355 BMID000000059356 BMID000000059357 BMID000000059358 BMID000000059359 BMID000000059360 BMID000000059361 BMID000000059362 BMID000000059363 BMID000000059364 BMID000000059365 BMID000000059366 BMID000000059367 BMID000000059368 BMID000000059369 BMID000000059370 BMID000000059371 BMID000000059372 BMID000000059373 BMID000000059374 BMID000000059375 BMID000000059376 BMID000000059377 BMID000000059378 BMID000000059379 BMID000000059380 BMID000000059381 BMID000000059382 BMID000000059383 BMID000000059384 BMID000000059385 BMID000000059386 BMID000000059387 BMID000000059388 BMID000000059389 BMID000000059390 BMID000000142229 BMID000000142542 BMID000000142845 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication
for more information.
Project description:Investigation of whole genome gene expression level changes in Lactococcus lactis KCTC 3769T,L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T . This proves that transcriptional profiling can facilitate in elucidating the genetic distance between closely related strains. A one chip study using total RNA recovered from of L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T . For the the transcriptome of of L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T was analyzed using the Lactococcus lactis KCTC 3769T microarray platform
Project description:Experimentally mapped transcriptome structure of Pyrococcus furiosus DSM 3638 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 16 nt). Pyrococcus furiosus DSM 3638 growth curve experiments were conducted in batch culture. Reference samples were cultured at mid-log phase (OD600 = 0.096). Seven samples were collected that spanned the key phases of the growth curve. Total RNA from samples of growth curve and reference were directly labeled with Cy3 or Cy5, and were hybridized to the tiling array. Dye-flip experiments were done for each sample. Log ratios were calculated for each probe (growth curve sample/reference). Transcriptome browser is available at http://baliga.systemsbiology.net/enigma/.
Project description:Comparison of gene expression between L. reuteri DSM 17938 and L. reuteri DSM 17938::pocR mutant grown in semi-defined medium after 24h of growth at 37C in anaerobic condition. PocR is an AraC-like transcriptional regulator, and changes in gene expression between mutant and wild-type strains would indicate genes involved in the PocR regulon. Includes 3 biological replicates and dye-swaps for DSM 17938 versus pocR mutant. One sample includes total RNA isolated from wildtype DSM 17938 labeled with either cy3 or cy5, and total RNA isolated from the pocR mutant labeled with the opposite dye. Samples 1, 2, and 3 represent biological replicates. Samples 4, 5, and 6 represent dye-swaps of the same biological replicates.