Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dehalococcoides mccartyi RC strain:RC

ABSTRACT: Draft genome sequence of Dehalococcoides mccartyi strain RC

PROVIDER: PRJNA230754 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Corrinoid salvaging and remodeling by Dehalococcoides mccartyi strain 195 in a defined consortium containing a corrinoid-producer Pelosinus fermentans strain R7

Project description:Differental gene expression of three consortia: Dhc195/DVH with exogenous cobalamin, Dhc195/DVH/PF with exogenous cobalamin, Dhc195/DVH/PF without exogenous cobalamin Acronyms: Dhc195: Dehalococcoides mccartyi strain 195; DVH: Desulfovibrio vulgaris Hildenborough; PF: Pelosinus fermentans strain R7

2014-02-05 | GSE45533 | GEO

Dehalococcoides mccartyi strain 195's genome-wide transcriptomic response to batch feeding of 1,2,3,4-Tetrachlorobenzene

Project description:Transcriptional profiling of the Donna II mixed community containing Dehalococcoides mccartyi strain 195 comparing a batch starved control to the mixed community being fed 1,2,3,4-tetrachlorobenzene as an electron acceptor. The goal was to determine which transcripts are regulated in response to a shift in a different electron acceptor rather than the consistent tetrachloroethene (PCE) that the parent reactor was maintained on.

2018-10-13 | GSE41231 | GEO

Dehalococcoides mccartyi

Project description:Dehalococcoides mccartyi strain UCH-ATV1, complete genome

| PRJDB4491 | ENA

Dehalococcoides mccartyi IBARAKI

Project description:Dehalococcoides mccartyi IBARAKI

| PRJDB1489 | ENA

Dehalococcoides mccartyi strain:CG3

Project description:Dehalococcoides mccartyi strain:CG3 Genome sequencing

| PRJNA300318 | ENA

Dehalococcoides mccartyi strain:JNA

Project description:Dehalococcoides mccartyi strain:JNA Genome sequencing

| PRJNA264866 | ENA

Dehalococcoides mccartyi strain:NIT01

Project description:Complete genome sequence of Dehalococcoides mccartyi NIT01

| PRJDB11219 | ENA

Dehalococcoides mccartyi

Project description:Dehalococcoides mccartyi Genome sequencing and assembly

| PRJNA428836 | ENA

Dehalococcoides mccartyi

Project description:Dehalococcoides mccartyi Transcriptome of three strains

| PRJNA231971 | ENA

Proteomic Dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

Project description:The proteome of the anaerobic bacterium Dehalococcoides mccartyi strain CBDB1 from the phylum Chloroflexi was investigated. D. mccartyi strain CBDB1 is a model organism for organohalide respiration where halogenated organic compounds serve as terminal electron acceptors. A wide range of halogenated organic compounds have been shown to be dehalogenated by the strain CBDB1. Therefore, D. mccartyi strain CBDB1 is a promising candidate for bioremediation application. Proteomic analysis of cultures grown with hexachlorobenzene as only electron acceptor resulted in identification of 8,491 distinct peptides which represents 1,023 proteins. A coverage of 70% of the 1,458 annotated proteins for strain CBDB1 was achieved. In addition, a spectral library was created from the annotated spectra. By using proteogenomics, 18 previously not annotated peptides were identified which contribute to four proteins previously not annotated and corrections in length of eight protein coding sequences.

2016-03-11 | PXD003081 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data