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Bifidobacterium ruminantium strain:LMG 21811

ABSTRACT: Bifidobacterium ruminantium strain:LMG 21811 Genome sequencing and assembly

PROVIDER: PRJNA239861 | ENA |

REPOSITORIES: ENA

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Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Bifidobacterium scardovii strain:LMG 21589

Project description:Bifidobacterium scardovii strain:LMG 21589 Genome sequencing and assembly

| PRJNA239864 | ENA

Bifidobacterium pullorum strain:LMG 21816

Project description:Bifidobacterium pullorum strain:LMG 21816 Genome sequencing and assembly

| PRJNA239859 | ENA

Bifidobacterium choerinum strain:LMG 10510

Project description:Bifidobacterium choerinum strain:LMG 10510 Genome sequencing and assembly

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Bifidobacterium cuniculi strain:LMG 10738

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Bifidobacterium leontopitheci strain:LMG 31471

Project description:Bifidobacterium leontopitheci strain:LMG 31471 Genome sequencing and assembly

| PRJNA574098 | ENA

Bifidobacterium angulatum strain:LMG 11039

Project description:Bifidobacterium angulatum strain:LMG 11039 Genome sequencing and assembly

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Bifidobacterium cebidarum strain:LMG 31469

Project description:Bifidobacterium cebidarum strain:LMG 31469 Genome sequencing and assembly

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