Genomics

Dataset Information

0

Staphylococcus aureus


ABSTRACT: Comparative genomics of Staphylococcus aureus and the application of a “pan-genome” for assigning RNA-Seq transcript reads from divergent strains and in vivo human nasal samples

PROVIDER: PRJNA242859 | ENA |

REPOSITORIES: ENA

Dataset's files

Source:
Action DRS
SRR1206350.fastq.gz Fastqsanger.gz
SRR1206351.fastq.gz Fastqsanger.gz
SRR1206352.fastq.gz Fastqsanger.gz
SRR1206353.fastq.gz Fastqsanger.gz
SRR1206344.fastq.gz Fastqsanger.gz
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Publications

Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains.

Chaves-Moreno Diego D   Wos-Oxley Melissa L ML   Jáuregui Ruy R   Medina Eva E   Oxley Andrew P A AP   Pieper Dietmar H DH  

PloS one 20151230 12


Understanding the behaviour of opportunistic pathogens such as Staphylococcus aureus in their natural human niche holds great medical interest. With the development of sensitive molecular methods and deep-sequencing technology, it is now possible to robustly assess the global transcriptome of bacterial species in their human habitat. However, as the genomes of the colonizing strains are often not available compiling the pan-genome for the species of interest may provide an effective method to re  ...[more]

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