Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Yersinia enterocolitica subsp. enterocolitica 8081

ABSTRACT: Yersinia enterocolitica subsp. enterocolitica 8081 Transcriptome or Gene expression

PROVIDER: PRJNA246238 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Yersinia enterocolitica subsp. enterocolitica

Project description:Yersinia enterocolitica subsp. enterocolitica Genome sequencing and assembly

| PRJNA430492 | ENA

Yersinia enterocolitica subsp. enterocolitica strain:FORC_002

Project description:Yersinia enterocolitica subsp. enterocolitica strain:FORC_002 Genome sequencing

| PRJNA259938 | ENA

Yersinia enterocolitica subsp. enterocolitica NBRC 105693

Project description:Yersinia enterocolitica subsp. enterocolitica NBRC 105693 genome sequencing project

| PRJDB273 | ENA

Yersinia enterocolitica subsp. enterocolitica WA-314

Project description:Yersinia enterocolitica subsp. enterocolitica WA-314 Genome sequencing and assembly

| PRJNA167372 | ENA

Yersinia enterocolitica subsp. palearctica PhRBD_Ye1

Project description:Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 genome sequencing

| PRJNA71137 | ENA

Gene expression analysis of Peyers patches after infection of C57BL/6 mice with Yersinia enterocolitica

Project description:Orogastral infection of mice with Yersinia enterocolitical leads to HIF-1 alpha activation.To elucidate whether this HIF-1 alpha activation also results in a HIF-1 dependent gene programming, the transcriptomes from Peyers Patches of uninfected and Yersinia enterocolitica infected mice were analyzed by means of of microarray analyses using Affymetrix GeneChip probe arrays (MG-U74Av2). In total, 288 genes were differentially regulated three day after infection in PP compared with the expression of uninfected control mice. Of these 288 genes, 217 were found to be differentially upregulated and from these, 14 genes ( 6.5% of all upregulated genes) are well described to be regulated via HIF-1. These data indicate that orogatral infection with Y. enterocolitica results in HIF-1 dependent gene programmning Keywords: Time course

2007-11-10 | GSE9558 | GEO

Whole transcriptome sequencing of phage φR1-37 and its host Yersinia enterocolitica

Project description:RNA-sequencing was preformed from RNA isolated from bacteria infected with the bacteriophage. In order to reveal the phage-host interactions between φR1-37 and Yersinia enterocolitica throughout the phage infection cycle, both the transcriptomes were scrutinized during all the stages of infection.

2016-01-22 | GSE77068 | GEO

Yersinia enterocolitica subsp. palearctica YO527

Project description:Yersinia enterocolitica subsp. palearctica YO527 genome sequencing project.

| PRJEA61339 | ENA

Yersinia enterocolitica subsp. palearctica Y11

Project description:Yersinia enterocolitica subsp. palearctica Y11 Genome sequencing project

| PRJEA60483 | ENA

ChIP-seq of primary human macrophages uninfected or infected with Yersinia enterocolitica strains

Project description:Pathogenic bacteria Yersinia enterocolitica injects virulence plasmid-encoded effectors through the type three secretion system into macrophages to modulate gene expression. At this point it is not known whether epigenetic modifications play a role in Yersinia regulation of gene expression. To answer this question primary human macrophages were infected with mock, WAC (virulence plasmid-cured strain) or WA314 (wild type) and samples were subjected to ChIP-seq for H3K4me3, H3K4me1, H3K27ac and H3K27me3. The effect of effector proteins YopM and YopP on histone modifications in macrophages was analyzed using a wild type strain lacking either YopM or YopP and subsequent ChIP-seq analysis.

2021-11-07 | E-MTAB-10475 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data