Other,Multiomics

Dataset Information

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Catharanthus roseus


ABSTRACT: Catharanthus Transcriptome and Gene Expression

OTHER RELATED OMICS DATASETS IN: E-GEOD-57326

PROVIDER: PRJNA246273 | ENA |

REPOSITORIES: ENA

Dataset's files

Source:
Action DRS
SRR1271857_1.fastq.gz Fastqsanger.gz
SRR1271857_2.fastq.gz Fastqsanger.gz
SRR1271858_1.fastq.gz Fastqsanger.gz
SRR1271858_2.fastq.gz Fastqsanger.gz
SRR1271859_1.fastq.gz Fastqsanger.gz
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Publications

Transcriptome analysis of Catharanthus roseus for gene discovery and expression profiling.

Verma Mohit M   Ghangal Rajesh R   Sharma Raghvendra R   Sinha Alok K AK   Jain Mukesh M  

PloS one 20140729 7


The medicinal plant, Catharanthus roseus, accumulates wide range of terpenoid indole alkaloids, which are well documented therapeutic agents. In this study, deep transcriptome sequencing of C. roseus was carried out to identify the pathways and enzymes (genes) involved in biosynthesis of these compounds. About 343 million reads were generated from different tissues (leaf, flower and root) of C. roseus using Illumina platform. Optimization of de novo assembly involving a two-step process resulted  ...[more]

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