Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Kaistella antarctica strain:LMG 24720

ABSTRACT: Kaistella antarctica strain:LMG 24720 Genome sequencing and assembly

PROVIDER: PRJNA254051 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Pseudomonas antarctica strain:LMG 22709

Project description:Pseudomonas antarctica LMG 22709 Genome sequencing

| PRJNA303786 | ENA

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

Project description:Investigation of whole genome gene expression level in Pseudozyma antarctica T-34, compared to Ustilago maydis UM521. To clarify the transcriptomic characteristics of Pseudozyma antarctica under the conditions of high MEL production, a DNA microarray of both the strains, Pseudozyma antarctica T-34 and Ustilago maydis UM521 was prepared and analyzed the transcriptomes. A DNA chip study using mRNA from the cultures of Pseudozyma antarctica T-34 and Ustilago maydis UM521 demonstrated the gene expression level of each strain.

2014-03-21 | E-GEOD-47171 | biostudies-arrayexpress

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

2014-03-21 | GSE47171 | GEO

Kaistella

Project description:Kaistella sp. overview

| PRJNA765098 | ENA

Kaistella solincola strain:DSM 22468

Project description:Kaistella solincola strain:DSM 22468 Genome sequencing and assembly

| PRJNA265074 | ENA

Kaistella soli strain:DKR-2

Project description:Kaistella soli strain:DKR-2 Genome sequencing and assembly

| PRJNA739148 | ENA

Kaistella anthropi strain:CCUG 52764

Project description:Kaistella anthropi strain:CCUG 52764 Genome sequencing and assembly

| PRJNA766714 | ENA

Kaistella jeonii strain:DSM 17048

Project description:Kaistella jeonii strain:DSM 17048 Genome sequencing and assembly

| PRJNA265076 | ENA

Phaeocystis antarctica CCMP 1871 and CCMP 1374, Ross Sea Phaeocystis bloom, LC-MSMS

Project description:Phaeocystis antarctica strain 1374, Phaeocystis antarctica strain 1871, grown in iron concentrations of 0nM, 1nM, 3nM, 10nM, 30nM, and 100nM. Ross Sea Phaeocystis bloom sample.

2019-05-30 | PXD005341 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data