Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Giardia intestinalis assemblage B strain:BAH15c1

ABSTRACT: Giardia intestinalis assemblage B strain:BAH15c1 Genome sequencing and assembly

PROVIDER: PRJNA268253 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Giardia intestinalis Assemblage B

Project description:Giardia intestinalis Assemblage B Genome sequencing

| PRJNA174038 | ENA

RNA-seq data of human enteroid- Giardia intestinalis infection

Project description:To investigate the transcriptional responses of intestinal epithelial cells and Giardia intestinalis, assemblage A isolate WB-C6, trophozoites during infection, we infected human enteroids with preconditioned trophozoites for 1h and 3h. Giardia intestinalis trophozoites were preconditioned before the infection with either DMEM/F-12 or DMEM/F-12 supplemented with 10% FBS to modify the trophozoites’ fitness.

2023-04-24 | GSE220954 | GEO

Giardia intestinalis assemblage A

Project description:Giardia intestinalis assemblage A, isolate AS98 whole genome sequencing project

| PRJNA51681 | ENA

Giardia intestinalis strain:assemblage A, isolate AS175

Project description:Giardia intestinalis assemblage A, isolate AS175 genome sequencing project.

| PRJNA51679 | ENA

Giardia intestinalis

Project description:Giardia intestinalis assemblage A, isolate AS175 genome sequencing project.

| PRJDA51679 | ENA

RNA-seq data from Giardia intestinalis WB trohozoites 7h into encysting Giardia cells infecting human Caco-2 cells

Project description:RNA-seq data from Giardia intestinalis WB trohozoites 7h into encysting Giardia cells infecting human Caco-2 cells

2022-01-31 | GSE144001 | GEO

Giardia intestinalis

Project description:Giardia intestinalis Genome sequencing and assembly

| PRJNA561185 | ENA

Giardia duodenalis Assemblage A Quantitative Proteomics

Project description:Giardia duodenalis is a protozoan parasite of a wide range of vertebrates and one of the leading causes of gastroenteritis worldwide. G. duodenalis is a species complex of 8 assemblages with the zoonotic assemblage A as one of two discrete subtypes that is infective for humans. With increasing genomic and transcriptomic data now publicly available through the centralised giardiaDB.org, we have quantitatively analysed the proteomes of 8 G. duodenalis assemblage A strains (7 A1 and 1 A2) to provide a comprehensive proteomic baseline to complement these studies. Protein analysis identified a non-redundant total of 1220 proteins with an average of 764 proteins in each strain. At least 10% of all proteins identified were from the 4 protein families in the G. duodenalis variable genome, and substantial differences in number and abundance profiles in the Variable Surface Protein (VSP) family was observed. We also searched the 8 strains against both assemblage A genomes (subassemblage A1 and A2 genomes) and showed losses in protein identifications, especially for protein identifications associated with Giardia variable gene families which are sub-assemblage specific. We observed two expression profiles of VSPs within Giardia, which was independent to host origin, subassemblage, geographic origin and introduction to axenic culture and may indicate variation in surface antigen switching events and population heterogeneity. We hypothesise this variation may be related to karotype and chromosomal variation, which would indicate an assemblage-independent mechanism of variation in G. duodenalis.

2015-02-26 | PXD001272 | Pride

Giardia intestinalis strain:GS

Project description:Giardia intestinalis strain:GS Genome sequencing and assembly

| PRJNA77979 | ENA

Giardia intestinalis strain:DH

Project description:Giardia intestinalis strain:DH Genome sequencing and assembly

| PRJNA77981 | ENA