Genomics

Dataset Information

471

Sturnus vulgaris


ABSTRACT: Sturnus vulgaris Genome sequencing and assembly

ORGANISM(S): Sturnus vulgaris  

PROVIDER: PRJNA293892 | ENA |

REPOSITORIES: ENA

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Publications

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Lowe T M TM   Eddy S R SR  

Nucleic acids research 19970301 5


We describe a program, tRNAscan-SE, which identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic c  ...[more]

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