Project description:In this study we investigate and compare DEGs of K. aerogenes macrocolonies during temperature entrainment (12:12, 35°C:36°C) and subsequent free running conditions (35°C). The goal of this experiment was to identify rhythmically expressed genes in K. aerogenes, the first human gut commensal bacterium with described circadian clock (Paulose et al. 2016). K. aerogenes circadian clock is sensitive to temperature entrainment (Paulose et al. 2019). To further investigate this temperature entrainment of K. aerogenes we performed RNA sequencing experiment. We identified 48 differentially expressed genes when comparing timepoints ZT6 to ZT18, 427 differentially expressed genes when comparing timepoints ZT6 to CT6, 6 differentially expressed genes between timepoints CT6 and CT18, and 2 differentially expressed genes between timepoints ZT18 and CT18.

2023-10-09 | GSE185502 | GEO

Haloplanus

Project description:Haloplanus sp. overview

| PRJNA481843 | ENA

Haloplanus rubicundus strain:CBA1113

Project description:Haloplanus rubicundus strain:CBA1113 Genome sequencing

| PRJNA481607 | ENA

Haloplanus rubicundus strain:CBA1112

Project description:Haloplanus rubicundus strain:CBA1112 Genome sequencing

| PRJNA481590 | ENA

Haloplanus sp. GDY1

Project description:Haloplanus sp. GDY1 Genome sequencing