Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sequencing of smallRNAs of fish embryos in somite stage

ABSTRACT: Sequencing of smallRNAs of fish embryos in somite stage

PROVIDER: PRJNA321022 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNAseq from 29 somite stage FNP

Project description:RNAseq from somite-matched frontonasal prominence (FNP) from E10.5 embryos at the 29-somite developmental stage

2021-05-08 | GSE174090 | GEO

Sequencing of smallRNAs of fish embryos in somite stage

Project description:Sequencing of smallRNA of different Nothobranchius furzeri (Nfu) strains and 8 further anual and not anual fish species for investigation of its differential expression with and without diapause.

2019-05-09 | GSE81231 | GEO

ATAC-seq profile of zebrafish periderm at 4-somite stage

Project description:In order to profile periderm-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the equal number of GFP-positive cells and GFP-negative cells from Tg(krt4:GFP) embryos and perform ATAC-seq. This study revealed the landscape of zebrafish periderm-specific nucleosome free regions at 4-somite stage.

2020-01-13 | GSE140240 | GEO

mRNA profile of zebrafish periderm at 4-somite stage

Project description:In order to compare the transcriptome and tissue-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the RNA from sorted GFP-positive cells of Tg(krt4:GFP) embryos and perform low-input RNA-seq. This study revealed periderm-specific transcriptome at 4-somite stage. Moreover, comparing with ATAC-seq from the same tissue, we confirmed the correlation between gene expression and nearby chromatin accessibility.

2020-01-13 | GSE139808 | GEO

High-throughput sequencing of small RNAs in chicken somite embryos

Project description:High-throughput sequencing of small RNAs in chicken somite embryos

2009-04-28 | GSE15513 | GEO

Integrin a5, aV, and aVb3 in zebrafish embryos at the 12 somite stage

Project description:Integrins are a major class of heterodimeric adhesion receptors composed of an a and b subunit that mediate cell adhesion to the extracellular matrix (ECM). The extracellular matrix protein fibronectin is important for early vertebrate development, and Integrin a5b1 and aVb3 are the two primary fibronectin receptors. To better define the integrin – ECM protein network at 10-13 somite stage of zebrafish development, we performed co-immunoprecipitation and Mass Spectrometry (MS) based proteomics using FLAG-tagged Integrin a5, aV, and aVb3 expressed in maternal zygotic a5 mutant (MZa5-/-) embryos. We found that Integrin a5b1 and aVb1 are the functional fibronectin receptors, whereas Integrin aVb3 displayed low affinity to both fibronectins (Fn1a and Fn1b). In addition, basement membrane ligands Laminins (lama1, lamb1a, lamc1) are roughly equal in all three datasets while Thrombospondins (thbs3b, thbs4b) and cartilage oligomeric matrix protein (comp/thbs5) are found exclusively in the aV dataset. Our results suggest a diverse role of aV class integrins in ECM protein recruitment.

2021-09-10 | PXD024665 | Pride

RNAseq from 8 somite stage PSM

Project description:RNAseq from somite-paired pre-somitic mesoderm from E8.5 embryo tailbuds at the 8-somite developmental stage

2021-05-08 | GSE174069 | GEO

Capture-C in somite-matched pre-somitic mesoderm from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos.

Project description:Capture-C from in situ HiC libraries in tailbud tissue containing pre-somitic mesoderm (PSM) dissected from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos E8.5 embryos at the 7-9 somite stage of development. Somite stage is a good indicator of the precise stage of embryonic development.

2023-04-04 | GSE228673 | GEO

Zebrafish periderm at 4-somite stage

Project description:Zebrafish periderm at 4-somite stage

| PRJNA589023 | ENA

RNAseq from 8 somite stage FNP

Project description:RNAseq from 8 somite stage FNP

| PRJNA728127 | ENA