Genomics

Dataset Information

10

Yersinia pestis strain:A-1249


ABSTRACT: Yersinia pestis strain:A-1249 Genome sequencing

ORGANISM(S): Yersinia pestis  

PROVIDER: PRJNA322239 | ENA |

REPOSITORIES: ENA

Dataset's files

Source:
Action DRS
LYMN01.dat.gz Other
LYMN01.fasta.gz Fasta.gz
LYMN01.master.dat Other
LYMN01.dat.gz Other
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Publications

Yersinia pestis strains of ancient phylogenetic branch 0.ANT are widely spread in the high-mountain plague foci of Kyrgyzstan.

Eroshenko Galina A GA   Nosov Nikita Yu NY   Krasnov Yaroslav M YM   Oglodin Yevgeny G YG   Kukleva Lyubov M LM   Guseva Natalia P NP   Kuznetsov Alexander A AA   Abdikarimov Sabyrzhan T ST   Dzhaparova Aigul K AK   Kutyrev Vladimir V VV  

PloS one 20171026 10


Fifty six Yersinia pestis strains, isolated over the period of more than 50 years in three high-mountain foci of Kyrgyzstan (Tien Shan, Alai, and Talas), have been characterized by means of PCR and single nucleotide polymorphism (SNP) typing methods. Seven of these strains were also characterized by means of whole genome sequencing and genome-wide SNP phylogenetic analysis. It was found that forty two strains belong to 0.ANT2, 0.ANT3 and 0.ANT5 phylogenetic branches. From these, strains of 0.ANT  ...[more]

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