Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Deep sequencing of mycovirus-derived small RNAs from the fungi Botrytis spp.

ABSTRACT: Deep sequencing of mycovirus-derived small RNAs from the fungi Botrytis spp.

PROVIDER: PRJNA325479 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Deep sequencing of mycovirus-derived small RNAs from the fungi Botrytis spp.

Project description:In this work, we have used deep sequencing to study the viral small RNA (vsiRNA) populations from different mycoviruses infecting field isolates of Botrytis spp. The mycoviruses under study belong to different genera and species and have different type of genome (dsRNA, (+)ssRNA, and (-)ssRNA). In general, vsiRNAs derived from mycoviruses are mostly of 21, 20 and 22 nucleotides in length, possess sense or antisense orientation either in a similar ratio or with a predominance of sense polarity depending on the virus species, have predominantly U at their 5' end, and are unevenly distributed along the viral genome showing conspicuous hotspots of vsiRNA accumulation. These characteristics reveal striking concomitances with vsiRNAs produced by plant viruses suggesting similar pathways of viral targeting in plants and fungi

2016-09-15 | GSE83282 | GEO

Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea

Project description:This study describes the gel-free phosphoproteomic analysis the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea grown in vitro under non-limiting conditions.

2014-06-09 | PXD000817 | Pride

Deep sequencing of mycovirus-derived small RNAs from Botrytis species.

Project description: Not available

| S-EPMC6638239 | biostudies-literature

Next generation sequencing analysis of ginseng transcriptomes in response to Botrytis cinerea △BcSpd1 treatment

Project description:Next generation sequencing (NGS) was performed to identify genes changed in ginseng upon Botrytis cinerea △BcSpd1 treatment. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng defense induced by Botrytis cinerea △BcSpd1 .

2023-12-20 | GSE221931 | GEO

Repertoires of small RNAs in Botrytis cinerea strains isolated from tomato or grapevine.

Project description:Sets of small RNAs from strains of Botrytis cinerea isolated from tomato or grapevine were compared to determine whether some small RNAs were specific to a population. The small RNAs were mapped to the retrotransposons identified in Sl3, Vv3 or B05.10 genomes.

2022-03-09 | GSE181592 | GEO

Next generation sequencing analysis of ginseng transcriptomes in response to Botrytis cinerea infection

Project description:Next generation sequencing (NGS) was performed to identify genes changed in ginseng upon Botrytis cinerea infection. The goal of the work is to find interesting genes involved in medical plant in response to fungi infection. The object is to reveal the molecular mechanism of medical plant defense.

2022-11-02 | GSE179805 | GEO

Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi

Project description:A variety of small RNAs, including the Dicer-dependent miRNAs and the Dicer-independent Piwi-interacting RNAs, associate with Argonaute family proteins to regulate gene expression in diverse cellular processes. These two species of small RNA have not been found in fungi. Here, by analyzing small RNA associated with the Neurospora Argonaute protein QDE-2, we show that diverse pathways generate miRNA-like small RNAs (milRNAs) and Dicer-independent small interfering RNAs (disiRNAs) in this filamentous fungus. Surprisingly, milRNAs are produced by at least four different mechanisms that use a distinct combination of factors, including Dicers, QDE-2, the exonuclease QIP and an RNAse III domain-containing protein MRPL3. In contrast, disiRNAs originate from loci producing overlapping sense and antisense transcripts, and do not require the known RNAi components for their production. Taken together, these results uncover several pathways for small RNA production in filamentous fungi, shedding light on the diversity and evolutionary origins of eukaryotic small RNAs. One small RNA library was generated using QDE-2 immunoprecipitate from Neurospora crassa.

2010-07-01 | E-GEOD-21175 | biostudies-arrayexpress

Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi

2010-07-01 | GSE21175 | GEO

Whole Genome Bisulfite Sequencing of Botrytis cinerea

Project description:Analysis of the genome-wide DNA methylation pattern of Botrytis cinerea. Results provide new and important information that DNA methylation is critical for pathogenicity and development of Botrytis cinerea by regulating gene expression.

2019-10-01 | GSE114821 | GEO

Deep groundwater fungi

Project description:Methylotrophic fungi in the deep terrestrial groundwater of Outokumpu, Finland

| PRJEB33243 | ENA